Experiment: Bethi_Library_OD0.05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3884 and Atu3885 are separated by 317 nucleotides Atu3885 and Atu3886 are separated by 21 nucleotides
Atu3884: Atu3884 - hypothetical protein, at 978,660 to 979,544
Atu3884
Atu3885: Atu3885 - inositol monophosphatase, at 979,862 to 980,638
Atu3885
Atu3886: Atu3886 - lysophospholipase, at 980,660 to 981,601
Atu3886
Position (kb) 979
980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 978.893 kb on + strand, within Atu3884 at 978.906 kb on - strand, within Atu3884 at 978.941 kb on + strand, within Atu3884 at 979.032 kb on + strand, within Atu3884 at 979.037 kb on + strand, within Atu3884 at 979.079 kb on + strand, within Atu3884 at 979.079 kb on + strand, within Atu3884 at 979.091 kb on + strand, within Atu3884 at 979.118 kb on - strand, within Atu3884 at 979.143 kb on - strand, within Atu3884 at 979.286 kb on - strand, within Atu3884 at 979.316 kb on + strand, within Atu3884 at 979.391 kb on + strand, within Atu3884 at 979.397 kb on + strand, within Atu3884 at 979.617 kb on + strand at 979.631 kb on + strand at 979.688 kb on - strand at 979.778 kb on + strand at 979.786 kb on + strand at 980.033 kb on - strand, within Atu3885 at 980.042 kb on - strand, within Atu3885 at 980.169 kb on + strand, within Atu3885 at 980.177 kb on - strand, within Atu3885 at 980.202 kb on + strand, within Atu3885 at 980.215 kb on - strand, within Atu3885 at 980.334 kb on - strand, within Atu3885 at 980.334 kb on - strand, within Atu3885 at 980.427 kb on + strand, within Atu3885 at 980.435 kb on - strand, within Atu3885 at 980.437 kb on + strand, within Atu3885 at 980.482 kb on + strand, within Atu3885 at 980.541 kb on + strand, within Atu3885 at 980.590 kb on + strand at 980.758 kb on - strand, within Atu3886 at 980.759 kb on + strand, within Atu3886 at 980.799 kb on + strand, within Atu3886 at 980.840 kb on - strand, within Atu3886 at 980.895 kb on - strand, within Atu3886 at 980.905 kb on - strand, within Atu3886 at 980.910 kb on - strand, within Atu3886 at 980.942 kb on - strand, within Atu3886 at 980.993 kb on - strand, within Atu3886 at 981.034 kb on + strand, within Atu3886 at 981.051 kb on + strand, within Atu3886 at 981.054 kb on - strand, within Atu3886 at 981.054 kb on - strand, within Atu3886 at 981.079 kb on - strand, within Atu3886 at 981.079 kb on - strand, within Atu3886 at 981.151 kb on + strand, within Atu3886 at 981.366 kb on - strand, within Atu3886 at 981.488 kb on - strand, within Atu3886 at 981.504 kb on + strand, within Atu3886 at 981.514 kb on + strand at 981.544 kb on - strand at 981.569 kb on + strand at 981.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05 remove 978,893 + Atu3884 0.26 +0.2 978,906 - Atu3884 0.28 -0.0 978,941 + Atu3884 0.32 -1.2 979,032 + Atu3884 0.42 -1.2 979,037 + Atu3884 0.43 +0.2 979,079 + Atu3884 0.47 -0.4 979,079 + Atu3884 0.47 -0.1 979,091 + Atu3884 0.49 +0.1 979,118 - Atu3884 0.52 +0.9 979,143 - Atu3884 0.55 +0.8 979,286 - Atu3884 0.71 +0.6 979,316 + Atu3884 0.74 +0.2 979,391 + Atu3884 0.83 +0.3 979,397 + Atu3884 0.83 -0.4 979,617 + -0.7 979,631 + +0.4 979,688 - +0.4 979,778 + -0.4 979,786 + +0.6 980,033 - Atu3885 0.22 -1.8 980,042 - Atu3885 0.23 -1.8 980,169 + Atu3885 0.40 +0.1 980,177 - Atu3885 0.41 -1.5 980,202 + Atu3885 0.44 -1.7 980,215 - Atu3885 0.45 -0.4 980,334 - Atu3885 0.61 -1.7 980,334 - Atu3885 0.61 +1.3 980,427 + Atu3885 0.73 -1.5 980,435 - Atu3885 0.74 -1.5 980,437 + Atu3885 0.74 -3.5 980,482 + Atu3885 0.80 -1.2 980,541 + Atu3885 0.87 -0.9 980,590 + +1.1 980,758 - Atu3886 0.10 +0.6 980,759 + Atu3886 0.11 -0.0 980,799 + Atu3886 0.15 +1.3 980,840 - Atu3886 0.19 +3.2 980,895 - Atu3886 0.25 +1.1 980,905 - Atu3886 0.26 +0.3 980,910 - Atu3886 0.27 +1.1 980,942 - Atu3886 0.30 +1.4 980,993 - Atu3886 0.35 +0.6 981,034 + Atu3886 0.40 +0.6 981,051 + Atu3886 0.42 -0.4 981,054 - Atu3886 0.42 +0.4 981,054 - Atu3886 0.42 +0.2 981,079 - Atu3886 0.44 +0.0 981,079 - Atu3886 0.44 +0.2 981,151 + Atu3886 0.52 +0.4 981,366 - Atu3886 0.75 +0.1 981,488 - Atu3886 0.88 +0.2 981,504 + Atu3886 0.90 -0.9 981,514 + +0.0 981,544 - +2.4 981,569 + +0.4 981,577 - -1.2
Or see this region's nucleotide sequence