Strain Fitness in Agrobacterium fabrum C58 around Atu3601

Experiment: Bethi_Library_OD0.05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3599 and Atu3600 overlap by 14 nucleotidesAtu3600 and Atu3601 are separated by 13 nucleotidesAtu3601 and Atu3602 are separated by 166 nucleotides Atu3599: Atu3599 - argininosuccinate lyase, at 653,110 to 654,510 Atu3599 Atu3600: Atu3600 - hypothetical protein, at 654,497 to 654,808 Atu3600 Atu3601: Atu3601 - diaminopimelate decarboxylase, at 654,822 to 656,090 Atu3601 Atu3602: Atu3602 - hypothetical protein, at 656,257 to 658,965 Atu3602 Position (kb) 654 655 656 657Strain fitness (log2 ratio) -1 0 1at 656.100 kb on + strandat 656.160 kb on - strandat 656.160 kb on - strandat 656.182 kb on - strandat 656.233 kb on + strandat 656.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05
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656,100 + -0.1
656,160 - +0.0
656,160 - -1.3
656,182 - +0.8
656,233 + -0.2
656,241 - +0.7

Or see this region's nucleotide sequence