Experiment: Bethi_Library_OD0.05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0535 and Atu0536 are separated by 2 nucleotides Atu0536 and Atu0537 are separated by 3 nucleotides Atu0537 and Atu0538 are separated by 133 nucleotides Atu0538 and Atu0539 are separated by 113 nucleotides
Atu0535: Atu0535 - hypothetical protein, at 526,902 to 527,390
Atu0535
Atu0536: Atu0536 - hypothetical protein, at 527,393 to 527,866
Atu0536
Atu0537: Atu0537 - histidinol dehydrogenase, at 527,870 to 529,168
Atu0537
Atu0538: Atu0538 - hypothetical protein, at 529,302 to 529,742
Atu0538
Atu0539: Atu0539 - UDP-N-acetylglucosamine, at 529,856 to 531,148
Atu0539
Position (kb) 527
528
529
530 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 527.068 kb on - strand, within Atu0535 at 527.103 kb on + strand, within Atu0535 at 527.153 kb on + strand, within Atu0535 at 527.153 kb on + strand, within Atu0535 at 527.161 kb on - strand, within Atu0535 at 527.161 kb on - strand, within Atu0535 at 527.161 kb on - strand, within Atu0535 at 527.161 kb on - strand, within Atu0535 at 527.260 kb on - strand, within Atu0535 at 527.390 kb on + strand at 527.390 kb on + strand at 527.455 kb on + strand, within Atu0536 at 527.550 kb on - strand, within Atu0536 at 527.649 kb on + strand, within Atu0536 at 527.657 kb on - strand, within Atu0536 at 527.657 kb on - strand, within Atu0536 at 527.678 kb on + strand, within Atu0536 at 527.802 kb on + strand, within Atu0536 at 527.802 kb on + strand, within Atu0536 at 527.802 kb on + strand, within Atu0536 at 527.810 kb on - strand, within Atu0536 at 527.876 kb on - strand at 527.922 kb on - strand at 527.930 kb on - strand at 527.940 kb on - strand at 527.979 kb on - strand at 527.979 kb on - strand at 528.038 kb on - strand, within Atu0537 at 528.105 kb on - strand, within Atu0537 at 528.143 kb on - strand, within Atu0537 at 528.348 kb on - strand, within Atu0537 at 528.424 kb on - strand, within Atu0537 at 528.489 kb on + strand, within Atu0537 at 528.497 kb on - strand, within Atu0537 at 528.525 kb on + strand, within Atu0537 at 528.660 kb on + strand, within Atu0537 at 528.683 kb on - strand, within Atu0537 at 528.737 kb on + strand, within Atu0537 at 528.737 kb on + strand, within Atu0537 at 528.745 kb on - strand, within Atu0537 at 528.828 kb on - strand, within Atu0537 at 528.868 kb on + strand, within Atu0537 at 529.035 kb on - strand, within Atu0537 at 529.048 kb on - strand at 529.058 kb on - strand at 529.058 kb on - strand at 529.069 kb on + strand at 529.178 kb on - strand at 529.241 kb on + strand at 529.356 kb on - strand, within Atu0538 at 529.378 kb on - strand, within Atu0538 at 529.482 kb on + strand, within Atu0538 at 529.662 kb on - strand, within Atu0538 at 529.685 kb on + strand, within Atu0538 at 529.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05 remove 527,068 - Atu0535 0.34 -0.2 527,103 + Atu0535 0.41 +1.2 527,153 + Atu0535 0.51 +0.8 527,153 + Atu0535 0.51 +1.6 527,161 - Atu0535 0.53 +0.7 527,161 - Atu0535 0.53 -0.9 527,161 - Atu0535 0.53 -0.2 527,161 - Atu0535 0.53 +0.5 527,260 - Atu0535 0.73 +0.2 527,390 + -0.1 527,390 + +0.2 527,455 + Atu0536 0.13 -0.4 527,550 - Atu0536 0.33 -0.6 527,649 + Atu0536 0.54 +0.1 527,657 - Atu0536 0.56 -0.7 527,657 - Atu0536 0.56 -0.3 527,678 + Atu0536 0.60 -1.0 527,802 + Atu0536 0.86 +0.6 527,802 + Atu0536 0.86 -0.4 527,802 + Atu0536 0.86 -0.0 527,810 - Atu0536 0.88 -0.6 527,876 - -0.4 527,922 - -1.0 527,930 - -4.1 527,940 - -2.3 527,979 - -4.1 527,979 - -1.8 528,038 - Atu0537 0.13 -1.9 528,105 - Atu0537 0.18 -0.4 528,143 - Atu0537 0.21 -1.5 528,348 - Atu0537 0.37 -2.5 528,424 - Atu0537 0.43 -3.2 528,489 + Atu0537 0.48 -1.0 528,497 - Atu0537 0.48 -1.6 528,525 + Atu0537 0.50 -0.8 528,660 + Atu0537 0.61 -0.8 528,683 - Atu0537 0.63 -3.6 528,737 + Atu0537 0.67 +1.6 528,737 + Atu0537 0.67 -3.8 528,745 - Atu0537 0.67 -2.9 528,828 - Atu0537 0.74 +0.6 528,868 + Atu0537 0.77 -1.6 529,035 - Atu0537 0.90 -0.9 529,048 - -2.6 529,058 - -1.8 529,058 - -0.0 529,069 + -0.4 529,178 - -0.1 529,241 + -0.9 529,356 - Atu0538 0.12 +0.4 529,378 - Atu0538 0.17 +1.6 529,482 + Atu0538 0.41 -0.3 529,662 - Atu0538 0.82 -0.8 529,685 + Atu0538 0.87 +1.1 529,777 + -0.0
Or see this region's nucleotide sequence