Experiment: Bethi_Library_OD0.05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0097 and Atu0098 overlap by 1 nucleotides Atu0098 and Atu0099 are separated by 15 nucleotides Atu0099 and Atu0100 are separated by 11 nucleotides Atu0100 and Atu0101 are separated by 150 nucleotides
Atu0097: Atu0097 - hypothetical protein, at 101,634 to 102,038
Atu0097
Atu0098: Atu0098 - mutT/nudix family protein, at 102,038 to 103,000
Atu0098
Atu0099: Atu0099 - prephenate dehydratase, at 103,016 to 103,879
Atu0099
Atu0100: Atu0100 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 103,891 to 104,646
Atu0100
Atu0101: Atu0101 - cytochrome c, at 104,797 to 105,375
Atu0101
Position (kb) 103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 102.156 kb on - strand, within Atu0098 at 102.161 kb on + strand, within Atu0098 at 102.161 kb on + strand, within Atu0098 at 102.162 kb on + strand, within Atu0098 at 102.247 kb on + strand, within Atu0098 at 102.255 kb on + strand, within Atu0098 at 102.255 kb on + strand, within Atu0098 at 102.399 kb on - strand, within Atu0098 at 102.507 kb on + strand, within Atu0098 at 102.666 kb on + strand, within Atu0098 at 102.666 kb on + strand, within Atu0098 at 102.702 kb on + strand, within Atu0098 at 102.721 kb on - strand, within Atu0098 at 102.774 kb on - strand, within Atu0098 at 102.781 kb on + strand, within Atu0098 at 102.869 kb on - strand, within Atu0098 at 102.888 kb on + strand, within Atu0098 at 102.998 kb on - strand at 103.022 kb on - strand at 103.031 kb on - strand at 103.110 kb on + strand, within Atu0099 at 103.191 kb on - strand, within Atu0099 at 103.239 kb on + strand, within Atu0099 at 103.247 kb on - strand, within Atu0099 at 103.247 kb on - strand, within Atu0099 at 103.247 kb on - strand, within Atu0099 at 103.270 kb on - strand, within Atu0099 at 103.448 kb on - strand, within Atu0099 at 103.471 kb on + strand, within Atu0099 at 103.507 kb on + strand, within Atu0099 at 103.555 kb on + strand, within Atu0099 at 103.562 kb on + strand, within Atu0099 at 103.692 kb on + strand, within Atu0099 at 103.760 kb on - strand, within Atu0099 at 104.661 kb on - strand at 104.732 kb on - strand at 104.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05 remove 102,156 - Atu0098 0.12 +0.7 102,161 + Atu0098 0.13 +0.6 102,161 + Atu0098 0.13 -0.4 102,162 + Atu0098 0.13 +0.1 102,247 + Atu0098 0.22 +0.1 102,255 + Atu0098 0.23 -0.1 102,255 + Atu0098 0.23 +0.3 102,399 - Atu0098 0.37 +0.1 102,507 + Atu0098 0.49 -1.0 102,666 + Atu0098 0.65 -0.3 102,666 + Atu0098 0.65 +0.0 102,702 + Atu0098 0.69 -0.7 102,721 - Atu0098 0.71 -0.3 102,774 - Atu0098 0.76 +0.5 102,781 + Atu0098 0.77 +0.5 102,869 - Atu0098 0.86 -0.5 102,888 + Atu0098 0.88 +0.4 102,998 - +0.1 103,022 - -0.3 103,031 - +0.3 103,110 + Atu0099 0.11 -2.1 103,191 - Atu0099 0.20 -1.9 103,239 + Atu0099 0.26 -0.9 103,247 - Atu0099 0.27 -1.3 103,247 - Atu0099 0.27 -1.7 103,247 - Atu0099 0.27 -1.5 103,270 - Atu0099 0.29 -1.1 103,448 - Atu0099 0.50 -0.3 103,471 + Atu0099 0.53 -1.9 103,507 + Atu0099 0.57 -1.1 103,555 + Atu0099 0.62 -0.9 103,562 + Atu0099 0.63 -1.6 103,692 + Atu0099 0.78 -2.3 103,760 - Atu0099 0.86 -3.7 104,661 - +0.6 104,732 - -1.0 104,769 - -0.7
Or see this region's nucleotide sequence