Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5531 and Atu5532 are separated by 238 nucleotides Atu5532 and Atu5533 are separated by 1 nucleotides
Atu5531: Atu5531 - ABC transporter substrate binding protein, at 524,983 to 526,233
Atu5531
Atu5532: Atu5532 - ABC transporter membrane spanning protein, at 526,472 to 527,281
Atu5532
Atu5533: Atu5533 - ABC transporter membrane spanning protein, at 527,283 to 528,422
Atu5533
Position (kb) 526
527
528 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 525.560 kb on - strand, within Atu5531 at 525.744 kb on - strand, within Atu5531 at 525.824 kb on + strand, within Atu5531 at 525.824 kb on + strand, within Atu5531 at 525.824 kb on + strand, within Atu5531 at 525.870 kb on + strand, within Atu5531 at 525.870 kb on + strand, within Atu5531 at 525.870 kb on + strand, within Atu5531 at 525.878 kb on - strand, within Atu5531 at 525.878 kb on - strand, within Atu5531 at 525.880 kb on + strand, within Atu5531 at 526.022 kb on - strand, within Atu5531 at 526.022 kb on - strand, within Atu5531 at 526.038 kb on + strand, within Atu5531 at 526.038 kb on + strand, within Atu5531 at 526.046 kb on - strand, within Atu5531 at 526.078 kb on - strand, within Atu5531 at 526.116 kb on + strand at 526.196 kb on - strand at 526.227 kb on + strand at 526.229 kb on - strand at 526.229 kb on - strand at 526.233 kb on + strand at 526.285 kb on - strand at 526.402 kb on + strand at 526.416 kb on + strand at 526.422 kb on - strand at 526.493 kb on - strand at 526.531 kb on + strand at 526.569 kb on + strand, within Atu5532 at 526.670 kb on + strand, within Atu5532 at 526.707 kb on + strand, within Atu5532 at 526.709 kb on - strand, within Atu5532 at 526.713 kb on + strand, within Atu5532 at 526.713 kb on + strand, within Atu5532 at 526.715 kb on - strand, within Atu5532 at 526.782 kb on + strand, within Atu5532 at 526.830 kb on - strand, within Atu5532 at 526.916 kb on - strand, within Atu5532 at 526.925 kb on + strand, within Atu5532 at 526.974 kb on + strand, within Atu5532 at 527.017 kb on - strand, within Atu5532 at 527.142 kb on - strand, within Atu5532 at 527.143 kb on - strand, within Atu5532 at 527.260 kb on + strand at 527.273 kb on - strand at 527.273 kb on - strand at 527.419 kb on + strand, within Atu5533 at 527.424 kb on + strand, within Atu5533 at 527.514 kb on - strand, within Atu5533 at 527.528 kb on - strand, within Atu5533 at 527.676 kb on - strand, within Atu5533 at 527.682 kb on - strand, within Atu5533 at 527.767 kb on + strand, within Atu5533 at 527.785 kb on - strand, within Atu5533 at 527.808 kb on - strand, within Atu5533 at 527.832 kb on + strand, within Atu5533 at 527.893 kb on + strand, within Atu5533 at 527.901 kb on - strand, within Atu5533 at 527.908 kb on + strand, within Atu5533 at 527.930 kb on + strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 528.024 kb on - strand, within Atu5533 at 528.047 kb on - strand, within Atu5533 at 528.094 kb on - strand, within Atu5533 at 528.100 kb on + strand, within Atu5533 at 528.163 kb on - strand, within Atu5533 at 528.163 kb on - strand, within Atu5533 at 528.165 kb on + strand, within Atu5533 at 528.210 kb on + strand, within Atu5533 at 528.210 kb on + strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.237 kb on - strand, within Atu5533 at 528.263 kb on + strand, within Atu5533
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 525,560 - Atu5531 0.46 +0.3 525,744 - Atu5531 0.61 -0.2 525,824 + Atu5531 0.67 -0.8 525,824 + Atu5531 0.67 +0.2 525,824 + Atu5531 0.67 -0.3 525,870 + Atu5531 0.71 -0.1 525,870 + Atu5531 0.71 -0.9 525,870 + Atu5531 0.71 +1.5 525,878 - Atu5531 0.72 +0.1 525,878 - Atu5531 0.72 -0.2 525,880 + Atu5531 0.72 -0.9 526,022 - Atu5531 0.83 -0.2 526,022 - Atu5531 0.83 +0.5 526,038 + Atu5531 0.84 +0.6 526,038 + Atu5531 0.84 +0.2 526,046 - Atu5531 0.85 -1.1 526,078 - Atu5531 0.88 -0.2 526,116 + -1.1 526,196 - -0.7 526,227 + -1.9 526,229 - -0.2 526,229 - -1.5 526,233 + -0.6 526,285 - -1.0 526,402 + -0.5 526,416 + -0.1 526,422 - +0.2 526,493 - -0.8 526,531 + -0.7 526,569 + Atu5532 0.12 +0.6 526,670 + Atu5532 0.24 +0.4 526,707 + Atu5532 0.29 +0.7 526,709 - Atu5532 0.29 +0.3 526,713 + Atu5532 0.30 -0.1 526,713 + Atu5532 0.30 +1.6 526,715 - Atu5532 0.30 -0.3 526,782 + Atu5532 0.38 +0.0 526,830 - Atu5532 0.44 -0.1 526,916 - Atu5532 0.55 +1.0 526,925 + Atu5532 0.56 +2.8 526,974 + Atu5532 0.62 +0.6 527,017 - Atu5532 0.67 -0.7 527,142 - Atu5532 0.83 +0.8 527,143 - Atu5532 0.83 -0.3 527,260 + +1.9 527,273 - -0.3 527,273 - -0.6 527,419 + Atu5533 0.12 +0.3 527,424 + Atu5533 0.12 -0.1 527,514 - Atu5533 0.20 -0.3 527,528 - Atu5533 0.21 +0.2 527,676 - Atu5533 0.34 +0.7 527,682 - Atu5533 0.35 +0.5 527,767 + Atu5533 0.42 -0.1 527,785 - Atu5533 0.44 +1.5 527,808 - Atu5533 0.46 -0.1 527,832 + Atu5533 0.48 +0.0 527,893 + Atu5533 0.54 +1.5 527,901 - Atu5533 0.54 -1.5 527,908 + Atu5533 0.55 +0.2 527,930 + Atu5533 0.57 +0.5 527,999 - Atu5533 0.63 -0.5 527,999 - Atu5533 0.63 +0.5 527,999 - Atu5533 0.63 -0.9 528,024 - Atu5533 0.65 +0.0 528,047 - Atu5533 0.67 +0.9 528,094 - Atu5533 0.71 +0.6 528,100 + Atu5533 0.72 +0.3 528,163 - Atu5533 0.77 +0.5 528,163 - Atu5533 0.77 +0.2 528,165 + Atu5533 0.77 -0.1 528,210 + Atu5533 0.81 +0.2 528,210 + Atu5533 0.81 -1.3 528,218 - Atu5533 0.82 -0.2 528,218 - Atu5533 0.82 -0.1 528,237 - Atu5533 0.84 -0.9 528,263 + Atu5533 0.86 +0.2
Or see this region's nucleotide sequence