Strain Fitness in Agrobacterium fabrum C58 around Atu5111

Experiment: Bethi_Library_OD0.01

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.01
115,363	-				-0.7
115,511	+		Atu5109	0.24	+0.2
115,519	-		Atu5109	0.28	-0.1
115,543	+		Atu5109	0.38	-0.6
115,608	+		Atu5109	0.66	-0.5
115,621	-		Atu5109	0.71	-0.1
115,673	-				-0.2
115,680	+				-0.4
115,701	+				-0.2
115,779	+		Atu5110	0.35	-0.2
116,049	-				+1.5
116,142	+				-0.2
116,224	+				-0.1
116,291	+				+0.3
116,310	-				+1.5
116,325	+				+0.4
116,343	+				-0.8
116,372	-				-0.0
116,654	+		Atu5111	0.10	-0.7
116,681	+		Atu5111	0.11	+0.3
116,750	+		Atu5111	0.12	+1.2
116,805	-		Atu5111	0.13	+0.0
116,927	-		Atu5111	0.16	-2.8
117,072	+		Atu5111	0.19	-0.3
117,083	-		Atu5111	0.19	-0.2
117,144	-		Atu5111	0.21	+0.9
117,232	-		Atu5111	0.23	+0.5
117,280	-		Atu5111	0.24	+1.2
117,287	-		Atu5111	0.24	-1.2
117,371	+		Atu5111	0.26	-0.3
117,371	+		Atu5111	0.26	-0.5
117,371	+		Atu5111	0.26	+0.1
117,371	+		Atu5111	0.26	-0.2
117,379	-		Atu5111	0.26	+0.0
117,413	-		Atu5111	0.26	-1.0
117,477	-		Atu5111	0.28	-0.3
117,582	-		Atu5111	0.30	-0.7
117,587	-		Atu5111	0.30	-0.1
117,683	-		Atu5111	0.32	+0.6
117,703	-		Atu5111	0.33	-0.2
117,744	+		Atu5111	0.34	-1.2
117,752	-		Atu5111	0.34	-0.6
117,752	-		Atu5111	0.34	+0.2
117,752	-		Atu5111	0.34	-0.5
117,867	+		Atu5111	0.36	+1.2
117,885	-		Atu5111	0.37	-0.5
117,934	-		Atu5111	0.38	+0.1
117,944	-		Atu5111	0.38	-1.0
117,956	+		Atu5111	0.38	-0.2
117,956	-		Atu5111	0.38	-0.0
118,032	-		Atu5111	0.40	-0.4
118,034	-		Atu5111	0.40	+0.2
118,085	+		Atu5111	0.41	+0.3
118,367	+		Atu5111	0.47	+0.2
118,391	+		Atu5111	0.48	+0.1
118,422	-		Atu5111	0.48	-0.6
118,449	-		Atu5111	0.49	-0.6
118,583	+		Atu5111	0.52	-0.7
118,597	+		Atu5111	0.52	-0.3
118,663	+		Atu5111	0.53	-0.2
118,767	-		Atu5111	0.56	+1.5
118,880	-		Atu5111	0.58	-0.6
118,894	+		Atu5111	0.58	-1.8
118,912	+		Atu5111	0.59	+0.1
119,093	+		Atu5111	0.63	+0.0
119,129	+		Atu5111	0.64	+0.5
119,130	+		Atu5111	0.64	-1.3
119,206	-		Atu5111	0.65	-0.1
119,319	-		Atu5111	0.68	-0.4
119,320	+		Atu5111	0.68	-2.3
119,371	-		Atu5111	0.69	+0.2
119,393	-		Atu5111	0.69	+0.5
119,407	-		Atu5111	0.70	-0.2
119,449	+		Atu5111	0.70	+0.0
119,450	+		Atu5111	0.70	-0.5
119,458	-		Atu5111	0.71	-0.5
119,584	+		Atu5111	0.73	+1.5
119,592	-		Atu5111	0.74	-0.3
119,597	-		Atu5111	0.74	-2.1
119,636	-		Atu5111	0.75	+0.5
119,707	+		Atu5111	0.76	-0.2
119,745	+		Atu5111	0.77	-2.1
119,753	-		Atu5111	0.77	-0.6
119,794	-		Atu5111	0.78	-0.1
119,803	-		Atu5111	0.78	-0.3
119,803	-		Atu5111	0.78	-1.1
119,825	-		Atu5111	0.79	-1.5
119,846	+		Atu5111	0.79	+1.1
119,854	+		Atu5111	0.79	-1.1
119,873	+		Atu5111	0.80	-0.3
119,893	+		Atu5111	0.80	-0.4
119,901	-		Atu5111	0.80	-0.7
120,197	+		Atu5111	0.87	-0.0
120,286	+		Atu5111	0.89	-0.7
120,294	-		Atu5111	0.89	-0.1
120,435	-				-0.1
120,593	-				-0.1
120,593	-				-0.7
120,600	+				-0.3
120,622	+				-0.4
120,622	+				-0.7
120,622	+				+0.2
120,622	+				-0.7
120,622	+				-0.3
120,622	+				-1.1
120,630	-				+2.5
120,630	-				-1.3
120,630	-				-0.1
120,630	-				-1.3
120,630	-				-1.9
120,647	-				+0.3
120,677	-				+0.8
120,712	-				+1.5
120,712	-				+0.0
120,749	-				-0.5
120,749	-				-1.2
120,749	-				-0.7
120,757	-				-0.9
120,769	+				-1.2
120,769	+				-0.1
120,769	+				-0.5
120,778	-				-1.0
120,793	+				+0.2
120,824	+				-0.2
120,827	-				-0.2
120,829	+				-0.4
120,832	-				-1.9
120,832	-				-0.6
120,832	-				-1.2
120,933	-				-0.5
121,407	+		Atu5112	0.29	-0.1
121,438	-		Atu5112	0.32	-0.2
121,445	+		Atu5112	0.32	-0.2
121,584	+		Atu5112	0.43	-0.3
121,670	+		Atu5112	0.49	-1.0
121,729	-		Atu5112	0.54	-0.8