Strain Fitness in Agrobacterium fabrum C58 around Atu4399

Experiment: Bethi_Library_OD0.01

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.01
1,533,808	-				+0.5
1,534,048	+		Atu4398	0.20	+0.2
1,534,056	-		Atu4398	0.21	-0.8
1,534,056	-		Atu4398	0.21	+1.2
1,534,056	-		Atu4398	0.21	-0.5
1,534,152	-		Atu4398	0.31	-0.6
1,534,152	-		Atu4398	0.31	-0.2
1,534,197	-		Atu4398	0.36	+0.4
1,534,414	+		Atu4398	0.59	-0.2
1,534,416	-		Atu4398	0.59	-0.4
1,534,426	+		Atu4398	0.60	-1.3
1,534,514	+		Atu4398	0.70	-0.4
1,534,541	-		Atu4398	0.73	-0.7
1,534,709	-				-1.4
1,534,719	-				-0.5
1,534,869	+		Atu4399	0.20	-0.6
1,534,882	+		Atu4399	0.23	-0.5
1,534,890	-		Atu4399	0.25	-0.7
1,534,890	-		Atu4399	0.25	-0.4
1,534,890	-		Atu4399	0.25	-0.3
1,535,052	+		Atu4399	0.68	-0.2
1,535,094	-		Atu4399	0.79	-0.6
1,535,100	+		Atu4399	0.81	-0.8
1,535,200	-				-0.7
1,535,255	-				-0.1
1,535,331	+				-0.5
1,535,367	-				-0.2
1,535,372	+				-0.5
1,535,372	+				-0.0
1,535,396	-				-0.8
1,535,437	+				+0.9
1,535,445	-				-0.4
1,535,481	+				-0.1
1,535,493	-		Atu4400	0.10	+0.4
1,535,600	-		Atu4400	0.15	+1.2
1,535,610	+		Atu4400	0.16	+0.0
1,535,679	+		Atu4400	0.19	-0.0
1,535,694	+		Atu4400	0.20	+0.9
1,535,694	+		Atu4400	0.20	-0.7
1,535,702	-		Atu4400	0.20	-1.7
1,535,712	-		Atu4400	0.21	+1.8
1,535,712	-		Atu4400	0.21	-1.0
1,535,946	+		Atu4400	0.31	-0.2
1,535,954	-		Atu4400	0.32	+0.2
1,536,012	+		Atu4400	0.34	-0.3
1,536,057	-		Atu4400	0.37	-0.6
1,536,072	+		Atu4400	0.37	+0.5
1,536,082	+		Atu4400	0.38	-0.0
1,536,116	+		Atu4400	0.39	-0.2