Strain Fitness in Agrobacterium fabrum C58 around Atu3276

Experiment: Bethi_Library_OD0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3274 and Atu3275 overlap by 4 nucleotidesAtu3275 and Atu3276 overlap by 1 nucleotidesAtu3276 and Atu3277 are separated by 173 nucleotidesAtu3277 and Atu3278 overlap by 1 nucleotides Atu3274: Atu3274 - AcrB/AcrD/AcrF family protein, at 294,591 to 297,731 Atu3274 Atu3275: Atu3275 - invasion associated protein B, at 297,728 to 298,306 Atu3275 Atu3276: Atu3276 - hypothetical protein, at 298,306 to 302,331 Atu3276 Atu3277: Atu3277 - nitrilotriacetate monooxygenase, at 302,505 to 303,029 Atu3277 Atu3278: Atu3278 - aryl-alcohol dehydrogenase, at 303,029 to 303,922 Atu3278 Position (kb) 298 299 300 301 302 303Strain fitness (log2 ratio) -2 -1 0 1 2at 297.340 kb on - strand, within Atu3274at 297.383 kb on - strand, within Atu3274at 297.494 kb on - strandat 297.517 kb on + strandat 297.517 kb on + strandat 297.597 kb on + strandat 297.640 kb on - strandat 297.671 kb on + strandat 297.676 kb on + strandat 297.801 kb on - strand, within Atu3275at 297.832 kb on - strand, within Atu3275at 297.880 kb on + strand, within Atu3275at 297.901 kb on + strand, within Atu3275at 297.906 kb on + strand, within Atu3275at 297.914 kb on - strand, within Atu3275at 297.919 kb on - strand, within Atu3275at 297.956 kb on - strand, within Atu3275at 298.005 kb on - strand, within Atu3275at 298.005 kb on - strand, within Atu3275at 298.082 kb on - strand, within Atu3275at 298.174 kb on - strand, within Atu3275at 298.242 kb on - strand, within Atu3275at 298.337 kb on + strandat 298.404 kb on + strandat 298.406 kb on + strandat 298.424 kb on - strandat 298.454 kb on - strandat 298.504 kb on - strandat 298.529 kb on + strandat 298.626 kb on + strandat 298.665 kb on + strandat 298.698 kb on - strandat 298.724 kb on - strand, within Atu3276at 298.757 kb on + strand, within Atu3276at 298.774 kb on + strand, within Atu3276at 298.811 kb on - strand, within Atu3276at 298.922 kb on - strand, within Atu3276at 298.922 kb on - strand, within Atu3276at 298.956 kb on + strand, within Atu3276at 298.956 kb on + strand, within Atu3276at 298.972 kb on + strand, within Atu3276at 299.078 kb on + strand, within Atu3276at 299.157 kb on - strand, within Atu3276at 299.205 kb on + strand, within Atu3276at 299.243 kb on - strand, within Atu3276at 299.268 kb on - strand, within Atu3276at 299.339 kb on - strand, within Atu3276at 299.339 kb on - strand, within Atu3276at 299.589 kb on + strand, within Atu3276at 299.597 kb on - strand, within Atu3276at 299.634 kb on + strand, within Atu3276at 299.636 kb on - strand, within Atu3276at 299.678 kb on - strand, within Atu3276at 300.186 kb on + strand, within Atu3276at 300.187 kb on + strand, within Atu3276at 300.253 kb on + strand, within Atu3276at 300.261 kb on - strand, within Atu3276at 300.346 kb on + strand, within Atu3276at 300.451 kb on + strand, within Atu3276at 300.454 kb on - strand, within Atu3276at 300.459 kb on - strand, within Atu3276at 300.504 kb on + strand, within Atu3276at 300.606 kb on + strand, within Atu3276at 300.614 kb on - strand, within Atu3276at 300.657 kb on - strand, within Atu3276at 300.680 kb on - strand, within Atu3276at 300.708 kb on + strand, within Atu3276at 300.824 kb on - strand, within Atu3276at 301.017 kb on + strand, within Atu3276at 301.032 kb on + strand, within Atu3276at 301.038 kb on + strand, within Atu3276at 301.046 kb on - strand, within Atu3276at 301.061 kb on + strand, within Atu3276at 301.069 kb on - strand, within Atu3276at 301.074 kb on - strand, within Atu3276at 301.128 kb on + strand, within Atu3276at 301.136 kb on - strand, within Atu3276at 301.174 kb on - strand, within Atu3276at 301.175 kb on + strand, within Atu3276at 301.249 kb on + strand, within Atu3276at 301.348 kb on - strand, within Atu3276at 301.386 kb on + strand, within Atu3276at 301.423 kb on + strand, within Atu3276at 301.423 kb on + strand, within Atu3276at 301.473 kb on + strand, within Atu3276at 301.523 kb on - strand, within Atu3276at 301.562 kb on + strand, within Atu3276at 301.570 kb on - strand, within Atu3276at 301.601 kb on + strand, within Atu3276at 301.609 kb on - strand, within Atu3276at 301.612 kb on - strand, within Atu3276at 301.614 kb on - strand, within Atu3276at 301.622 kb on - strand, within Atu3276at 301.635 kb on - strand, within Atu3276at 301.635 kb on - strand, within Atu3276at 301.743 kb on - strand, within Atu3276at 301.763 kb on - strand, within Atu3276at 301.790 kb on - strand, within Atu3276at 301.800 kb on + strand, within Atu3276at 301.855 kb on + strand, within Atu3276at 301.938 kb on + strandat 301.959 kb on + strandat 301.986 kb on + strandat 302.024 kb on + strandat 302.024 kb on + strandat 302.024 kb on - strandat 302.032 kb on - strandat 302.092 kb on - strandat 302.102 kb on - strandat 302.104 kb on + strandat 302.112 kb on - strandat 302.114 kb on + strandat 302.114 kb on + strandat 302.122 kb on - strandat 302.122 kb on - strandat 302.122 kb on - strandat 302.234 kb on + strandat 302.242 kb on + strandat 302.250 kb on - strandat 302.300 kb on - strandat 302.442 kb on - strandat 302.447 kb on + strandat 302.488 kb on + strandat 302.503 kb on + strandat 302.503 kb on + strandat 302.511 kb on - strandat 302.511 kb on - strandat 302.582 kb on - strand, within Atu3277at 302.591 kb on + strand, within Atu3277at 302.612 kb on + strand, within Atu3277at 302.668 kb on - strand, within Atu3277at 302.807 kb on + strand, within Atu3277at 302.926 kb on - strand, within Atu3277at 302.935 kb on + strand, within Atu3277at 303.064 kb on + strandat 303.064 kb on - strandat 303.064 kb on - strandat 303.081 kb on - strandat 303.122 kb on - strand, within Atu3278at 303.183 kb on - strand, within Atu3278at 303.214 kb on + strand, within Atu3278at 303.261 kb on + strand, within Atu3278at 303.261 kb on + strand, within Atu3278at 303.296 kb on + strand, within Atu3278at 303.304 kb on - strand, within Atu3278

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01
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297,340 - Atu3274 0.88 +0.4
297,383 - Atu3274 0.89 -1.8
297,494 - -0.1
297,517 + +0.6
297,517 + +0.0
297,597 + -0.6
297,640 - +0.0
297,671 + -0.7
297,676 + -0.2
297,801 - Atu3275 0.13 -0.1
297,832 - Atu3275 0.18 +0.6
297,880 + Atu3275 0.26 +0.0
297,901 + Atu3275 0.30 -0.1
297,906 + Atu3275 0.31 +0.2
297,914 - Atu3275 0.32 -0.3
297,919 - Atu3275 0.33 -0.7
297,956 - Atu3275 0.39 -0.4
298,005 - Atu3275 0.48 +1.0
298,005 - Atu3275 0.48 -0.3
298,082 - Atu3275 0.61 +1.1
298,174 - Atu3275 0.77 -0.2
298,242 - Atu3275 0.89 +0.5
298,337 + +0.4
298,404 + -0.8
298,406 + -0.1
298,424 - +0.5
298,454 - +0.1
298,504 - -0.9
298,529 + +1.8
298,626 + +0.0
298,665 + -0.9
298,698 - -1.3
298,724 - Atu3276 0.10 +0.1
298,757 + Atu3276 0.11 -0.2
298,774 + Atu3276 0.12 +0.2
298,811 - Atu3276 0.13 -0.2
298,922 - Atu3276 0.15 +1.6
298,922 - Atu3276 0.15 -1.1
298,956 + Atu3276 0.16 +0.7
298,956 + Atu3276 0.16 +0.2
298,972 + Atu3276 0.17 -0.5
299,078 + Atu3276 0.19 +0.1
299,157 - Atu3276 0.21 +0.2
299,205 + Atu3276 0.22 +0.7
299,243 - Atu3276 0.23 -0.3
299,268 - Atu3276 0.24 +1.4
299,339 - Atu3276 0.26 +0.6
299,339 - Atu3276 0.26 -0.2
299,589 + Atu3276 0.32 -0.1
299,597 - Atu3276 0.32 -0.3
299,634 + Atu3276 0.33 -1.0
299,636 - Atu3276 0.33 -0.5
299,678 - Atu3276 0.34 +0.2
300,186 + Atu3276 0.47 +0.2
300,187 + Atu3276 0.47 -0.3
300,253 + Atu3276 0.48 +2.0
300,261 - Atu3276 0.49 +0.0
300,346 + Atu3276 0.51 +1.6
300,451 + Atu3276 0.53 -0.9
300,454 - Atu3276 0.53 +0.1
300,459 - Atu3276 0.53 +0.6
300,504 + Atu3276 0.55 +0.6
300,606 + Atu3276 0.57 +0.4
300,614 - Atu3276 0.57 +0.5
300,657 - Atu3276 0.58 +1.0
300,680 - Atu3276 0.59 +0.2
300,708 + Atu3276 0.60 +0.2
300,824 - Atu3276 0.63 +0.5
301,017 + Atu3276 0.67 +0.7
301,032 + Atu3276 0.68 +0.6
301,038 + Atu3276 0.68 +0.4
301,046 - Atu3276 0.68 +0.3
301,061 + Atu3276 0.68 +0.2
301,069 - Atu3276 0.69 +0.2
301,074 - Atu3276 0.69 +0.4
301,128 + Atu3276 0.70 +0.2
301,136 - Atu3276 0.70 -0.3
301,174 - Atu3276 0.71 +0.8
301,175 + Atu3276 0.71 -0.1
301,249 + Atu3276 0.73 -0.6
301,348 - Atu3276 0.76 +0.7
301,386 + Atu3276 0.77 -1.6
301,423 + Atu3276 0.77 -0.7
301,423 + Atu3276 0.77 +0.4
301,473 + Atu3276 0.79 +0.7
301,523 - Atu3276 0.80 +0.0
301,562 + Atu3276 0.81 -0.6
301,570 - Atu3276 0.81 +0.4
301,601 + Atu3276 0.82 -0.1
301,609 - Atu3276 0.82 -0.8
301,612 - Atu3276 0.82 +0.5
301,614 - Atu3276 0.82 -0.0
301,622 - Atu3276 0.82 +1.2
301,635 - Atu3276 0.83 +0.7
301,635 - Atu3276 0.83 +0.1
301,743 - Atu3276 0.85 -2.6
301,763 - Atu3276 0.86 +1.3
301,790 - Atu3276 0.87 +0.2
301,800 + Atu3276 0.87 +0.2
301,855 + Atu3276 0.88 -0.4
301,938 + -0.1
301,959 + -0.1
301,986 + +0.1
302,024 + +0.0
302,024 + +0.3
302,024 - +0.1
302,032 - +0.4
302,092 - +0.3
302,102 - +0.4
302,104 + -0.1
302,112 - +0.4
302,114 + -0.2
302,114 + +1.1
302,122 - -0.4
302,122 - -0.0
302,122 - -0.1
302,234 + +0.2
302,242 + +2.0
302,250 - +0.1
302,300 - +0.2
302,442 - -0.3
302,447 + -0.1
302,488 + -0.0
302,503 + +2.6
302,503 + +0.0
302,511 - -0.2
302,511 - -0.1
302,582 - Atu3277 0.15 -0.6
302,591 + Atu3277 0.16 +0.2
302,612 + Atu3277 0.20 +0.0
302,668 - Atu3277 0.31 +1.0
302,807 + Atu3277 0.58 -0.1
302,926 - Atu3277 0.80 +0.2
302,935 + Atu3277 0.82 -1.6
303,064 + +0.7
303,064 - -0.3
303,064 - -0.8
303,081 - -0.4
303,122 - Atu3278 0.10 -0.6
303,183 - Atu3278 0.17 +0.0
303,214 + Atu3278 0.21 -0.1
303,261 + Atu3278 0.26 +0.4
303,261 + Atu3278 0.26 -0.1
303,296 + Atu3278 0.30 +1.0
303,304 - Atu3278 0.31 -0.0

Or see this region's nucleotide sequence