Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3185 and Atu3186 are separated by 70 nucleotides Atu3186 and Atu3187 are separated by 9 nucleotides Atu3187 and Atu3188 overlap by 1 nucleotides
Atu3185: Atu3185 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 194,587 to 195,906
Atu3185
Atu3186: Atu3186 - glycerol-3-phosphate ABC transporter permease, at 195,977 to 196,858
Atu3186
Atu3187: Atu3187 - glycerol-3-phosphate ABC transporter permease, at 196,868 to 197,716
Atu3187
Atu3188: Atu3188 - glycerol-3-phosphate transporter ATP-binding subunit, at 197,716 to 198,777
Atu3188
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.970 kb on - strand at 195.975 kb on - strand at 196.004 kb on + strand at 196.115 kb on - strand, within Atu3186 at 196.115 kb on - strand, within Atu3186 at 196.172 kb on + strand, within Atu3186 at 196.189 kb on + strand, within Atu3186 at 196.194 kb on + strand, within Atu3186 at 196.198 kb on + strand, within Atu3186 at 196.204 kb on - strand, within Atu3186 at 196.204 kb on - strand, within Atu3186 at 196.286 kb on - strand, within Atu3186 at 196.381 kb on + strand, within Atu3186 at 196.391 kb on + strand, within Atu3186 at 196.404 kb on - strand, within Atu3186 at 196.576 kb on + strand, within Atu3186 at 196.584 kb on - strand, within Atu3186 at 196.665 kb on + strand, within Atu3186 at 196.729 kb on + strand, within Atu3186 at 196.805 kb on + strand at 196.847 kb on + strand at 197.004 kb on + strand, within Atu3187 at 197.004 kb on + strand, within Atu3187 at 197.027 kb on - strand, within Atu3187 at 197.109 kb on - strand, within Atu3187 at 197.265 kb on + strand, within Atu3187 at 197.309 kb on - strand, within Atu3187 at 197.397 kb on - strand, within Atu3187 at 197.429 kb on - strand, within Atu3187 at 197.510 kb on - strand, within Atu3187 at 197.604 kb on - strand, within Atu3187 at 197.606 kb on + strand, within Atu3187 at 197.606 kb on + strand, within Atu3187 at 197.652 kb on - strand at 197.677 kb on + strand at 197.694 kb on + strand at 197.770 kb on + strand at 197.778 kb on - strand at 197.898 kb on + strand, within Atu3188 at 197.958 kb on - strand, within Atu3188 at 198.032 kb on - strand, within Atu3188 at 198.059 kb on + strand, within Atu3188 at 198.059 kb on + strand, within Atu3188 at 198.140 kb on - strand, within Atu3188 at 198.145 kb on + strand, within Atu3188 at 198.220 kb on - strand, within Atu3188 at 198.226 kb on + strand, within Atu3188 at 198.290 kb on + strand, within Atu3188 at 198.300 kb on + strand, within Atu3188 at 198.376 kb on - strand, within Atu3188 at 198.470 kb on - strand, within Atu3188 at 198.544 kb on - strand, within Atu3188 at 198.593 kb on - strand, within Atu3188 at 198.595 kb on + strand, within Atu3188 at 198.595 kb on + strand, within Atu3188 at 198.632 kb on + strand, within Atu3188 at 198.640 kb on - strand, within Atu3188 at 198.640 kb on - strand, within Atu3188 at 198.689 kb on + strand at 198.689 kb on + strand at 198.689 kb on + strand at 198.689 kb on + strand at 198.694 kb on + strand at 198.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 195,970 - -0.4 195,975 - +0.4 196,004 + -1.0 196,115 - Atu3186 0.16 +0.3 196,115 - Atu3186 0.16 +0.5 196,172 + Atu3186 0.22 +0.3 196,189 + Atu3186 0.24 -0.0 196,194 + Atu3186 0.25 -0.5 196,198 + Atu3186 0.25 +0.5 196,204 - Atu3186 0.26 +0.4 196,204 - Atu3186 0.26 -0.4 196,286 - Atu3186 0.35 -0.9 196,381 + Atu3186 0.46 +0.4 196,391 + Atu3186 0.47 +0.1 196,404 - Atu3186 0.48 +0.0 196,576 + Atu3186 0.68 -0.2 196,584 - Atu3186 0.69 +0.9 196,665 + Atu3186 0.78 -0.1 196,729 + Atu3186 0.85 -0.1 196,805 + +1.1 196,847 + -0.7 197,004 + Atu3187 0.16 +0.3 197,004 + Atu3187 0.16 +0.9 197,027 - Atu3187 0.19 -0.9 197,109 - Atu3187 0.28 -0.4 197,265 + Atu3187 0.47 +0.1 197,309 - Atu3187 0.52 -1.6 197,397 - Atu3187 0.62 -1.7 197,429 - Atu3187 0.66 -1.1 197,510 - Atu3187 0.76 +1.6 197,604 - Atu3187 0.87 -1.0 197,606 + Atu3187 0.87 -0.4 197,606 + Atu3187 0.87 -0.9 197,652 - +1.9 197,677 + +0.1 197,694 + +0.6 197,770 + -0.5 197,778 - -0.5 197,898 + Atu3188 0.17 +0.2 197,958 - Atu3188 0.23 +0.7 198,032 - Atu3188 0.30 -0.1 198,059 + Atu3188 0.32 -0.1 198,059 + Atu3188 0.32 -0.3 198,140 - Atu3188 0.40 -0.7 198,145 + Atu3188 0.40 -0.1 198,220 - Atu3188 0.47 +0.9 198,226 + Atu3188 0.48 -0.7 198,290 + Atu3188 0.54 -3.4 198,300 + Atu3188 0.55 -3.5 198,376 - Atu3188 0.62 -1.0 198,470 - Atu3188 0.71 -0.4 198,544 - Atu3188 0.78 +0.4 198,593 - Atu3188 0.83 -0.5 198,595 + Atu3188 0.83 -0.1 198,595 + Atu3188 0.83 -0.4 198,632 + Atu3188 0.86 -0.6 198,640 - Atu3188 0.87 +0.3 198,640 - Atu3188 0.87 +0.2 198,689 + +0.0 198,689 + +0.1 198,689 + -1.4 198,689 + -0.4 198,694 + -0.0 198,702 - +0.5
Or see this region's nucleotide sequence