Strain Fitness in Agrobacterium fabrum C58 around Atu0198

Experiment: Bethi_Library_OD0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0196 and Atu0197 overlap by 4 nucleotidesAtu0197 and Atu0198 overlap by 4 nucleotidesAtu0198 and Atu0199 are separated by 104 nucleotides Atu0196: Atu0196 - ABC transporter, membrane spanning protein (proline/glycine/betaine), at 200,281 to 201,021 Atu0196 Atu0197: Atu0197 - ABC transporter, nucleotide binding/ATPase protein (proline/glycine/betaine), at 201,018 to 201,956 Atu0197 Atu0198: Atu0198 - ABC transporter, membrane spanning protein (proline/glycine/betaine), at 201,953 to 203,098 Atu0198 Atu0199: Atu0199 - ABC transporter, substrate binding protein (proline/glycine/betaine), at 203,203 to 204,114 Atu0199 Position (kb) 201 202 203 204Strain fitness (log2 ratio) -2 -1 0 1at 201.066 kb on + strandat 201.085 kb on - strandat 201.128 kb on - strand, within Atu0197at 201.134 kb on + strand, within Atu0197at 201.181 kb on - strand, within Atu0197at 201.207 kb on + strand, within Atu0197at 201.215 kb on - strand, within Atu0197at 201.306 kb on + strand, within Atu0197at 201.306 kb on + strand, within Atu0197at 201.429 kb on + strand, within Atu0197at 201.429 kb on + strand, within Atu0197at 201.437 kb on - strand, within Atu0197at 201.524 kb on - strand, within Atu0197at 201.586 kb on - strand, within Atu0197at 201.597 kb on - strand, within Atu0197at 201.691 kb on + strand, within Atu0197at 201.853 kb on - strand, within Atu0197at 201.874 kb on - strandat 201.970 kb on + strandat 202.000 kb on - strandat 202.001 kb on + strandat 202.050 kb on + strandat 202.060 kb on + strandat 202.060 kb on + strandat 202.067 kb on + strandat 202.067 kb on + strandat 202.067 kb on + strandat 202.075 kb on - strand, within Atu0198at 202.163 kb on - strand, within Atu0198at 202.243 kb on + strand, within Atu0198at 202.251 kb on - strand, within Atu0198at 202.251 kb on - strand, within Atu0198at 202.251 kb on - strand, within Atu0198at 202.382 kb on - strand, within Atu0198at 202.434 kb on + strand, within Atu0198at 202.442 kb on - strand, within Atu0198at 202.442 kb on - strand, within Atu0198at 202.468 kb on - strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.489 kb on - strand, within Atu0198at 202.510 kb on + strand, within Atu0198at 202.596 kb on - strand, within Atu0198at 202.623 kb on + strand, within Atu0198at 202.631 kb on - strand, within Atu0198at 202.722 kb on + strand, within Atu0198at 202.730 kb on - strand, within Atu0198at 202.766 kb on - strand, within Atu0198at 202.824 kb on - strand, within Atu0198at 202.956 kb on + strand, within Atu0198at 202.988 kb on - strandat 202.997 kb on - strandat 203.155 kb on + strandat 203.173 kb on - strandat 203.246 kb on + strandat 203.254 kb on - strandat 203.254 kb on - strandat 203.269 kb on - strandat 203.290 kb on + strandat 203.290 kb on + strandat 203.311 kb on - strand, within Atu0199at 203.418 kb on - strand, within Atu0199at 203.450 kb on - strand, within Atu0199at 203.462 kb on + strand, within Atu0199at 203.470 kb on - strand, within Atu0199at 203.470 kb on - strand, within Atu0199at 203.593 kb on + strand, within Atu0199at 203.593 kb on + strand, within Atu0199at 203.593 kb on + strand, within Atu0199at 203.719 kb on - strand, within Atu0199at 203.802 kb on + strand, within Atu0199at 203.885 kb on - strand, within Atu0199at 203.885 kb on - strand, within Atu0199at 203.928 kb on + strand, within Atu0199at 203.971 kb on - strand, within Atu0199at 203.971 kb on - strand, within Atu0199at 203.973 kb on + strand, within Atu0199at 204.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01
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201,066 + +0.0
201,085 - -0.7
201,128 - Atu0197 0.12 +0.1
201,134 + Atu0197 0.12 +0.1
201,181 - Atu0197 0.17 -0.5
201,207 + Atu0197 0.20 +0.3
201,215 - Atu0197 0.21 +0.9
201,306 + Atu0197 0.31 +0.7
201,306 + Atu0197 0.31 -0.3
201,429 + Atu0197 0.44 +0.2
201,429 + Atu0197 0.44 +0.3
201,437 - Atu0197 0.45 -0.6
201,524 - Atu0197 0.54 -0.1
201,586 - Atu0197 0.60 +0.4
201,597 - Atu0197 0.62 +0.3
201,691 + Atu0197 0.72 -1.4
201,853 - Atu0197 0.89 -0.0
201,874 - +0.7
201,970 + +0.3
202,000 - -1.0
202,001 + -0.0
202,050 + +0.4
202,060 + -0.2
202,060 + +0.4
202,067 + +0.2
202,067 + +0.4
202,067 + -2.3
202,075 - Atu0198 0.11 +0.0
202,163 - Atu0198 0.18 +0.8
202,243 + Atu0198 0.25 +0.4
202,251 - Atu0198 0.26 -0.2
202,251 - Atu0198 0.26 +0.5
202,251 - Atu0198 0.26 +1.4
202,382 - Atu0198 0.37 +1.0
202,434 + Atu0198 0.42 +0.1
202,442 - Atu0198 0.43 +0.2
202,442 - Atu0198 0.43 +0.2
202,468 - Atu0198 0.45 +1.0
202,481 + Atu0198 0.46 +0.3
202,481 + Atu0198 0.46 +0.7
202,481 + Atu0198 0.46 +0.4
202,481 + Atu0198 0.46 -0.4
202,481 + Atu0198 0.46 +0.1
202,489 - Atu0198 0.47 -0.7
202,510 + Atu0198 0.49 -0.3
202,596 - Atu0198 0.56 -1.1
202,623 + Atu0198 0.58 +0.6
202,631 - Atu0198 0.59 +1.0
202,722 + Atu0198 0.67 +0.6
202,730 - Atu0198 0.68 +0.0
202,766 - Atu0198 0.71 +0.0
202,824 - Atu0198 0.76 -0.0
202,956 + Atu0198 0.88 +0.9
202,988 - -0.1
202,997 - +0.6
203,155 + -0.4
203,173 - +0.1
203,246 + +0.2
203,254 - -0.4
203,254 - +1.6
203,269 - +0.2
203,290 + +0.2
203,290 + +0.5
203,311 - Atu0199 0.12 -0.2
203,418 - Atu0199 0.24 -0.8
203,450 - Atu0199 0.27 +0.5
203,462 + Atu0199 0.28 -0.3
203,470 - Atu0199 0.29 -0.2
203,470 - Atu0199 0.29 -0.9
203,593 + Atu0199 0.43 -0.0
203,593 + Atu0199 0.43 +0.2
203,593 + Atu0199 0.43 +0.0
203,719 - Atu0199 0.57 +0.5
203,802 + Atu0199 0.66 +0.8
203,885 - Atu0199 0.75 -0.1
203,885 - Atu0199 0.75 +0.1
203,928 + Atu0199 0.79 -0.5
203,971 - Atu0199 0.84 +1.4
203,971 - Atu0199 0.84 -0.2
203,973 + Atu0199 0.84 -2.1
204,089 - +0.4

Or see this region's nucleotide sequence