Strain Fitness in Agrobacterium fabrum C58 around Atu6019

Experiment: Bethi_Library_OD0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6018 and Atu6019 are separated by 47 nucleotidesAtu6019 and Atu6020 overlap by 4 nucleotidesAtu6020 and Atu6021 overlap by 4 nucleotides Atu6018: Atu6018 - arginase, at 27,251 to 28,225 Atu6018 Atu6019: Atu6019 - D-nopaline dehydrogenase, at 28,273 to 29,691 Atu6019 Atu6020: Atu6020 - conserved hypothetical protein, at 29,688 to 29,981 Atu6020 Atu6021: Atu6021 - D-nopaline dehydrogenase, at 29,978 to 31,096 Atu6021 Position (kb) 28 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 27.301 kb on + strandat 27.312 kb on + strandat 27.387 kb on - strand, within Atu6018at 27.400 kb on - strand, within Atu6018at 27.450 kb on + strand, within Atu6018at 27.450 kb on + strand, within Atu6018at 27.460 kb on + strand, within Atu6018at 27.460 kb on + strand, within Atu6018at 27.468 kb on - strand, within Atu6018at 27.511 kb on + strand, within Atu6018at 27.521 kb on + strand, within Atu6018at 27.544 kb on - strand, within Atu6018at 27.551 kb on + strand, within Atu6018at 27.598 kb on + strand, within Atu6018at 27.608 kb on + strand, within Atu6018at 27.698 kb on + strand, within Atu6018at 27.703 kb on + strand, within Atu6018at 27.735 kb on + strand, within Atu6018at 27.754 kb on - strand, within Atu6018at 27.782 kb on + strand, within Atu6018at 27.785 kb on - strand, within Atu6018at 27.788 kb on - strand, within Atu6018at 27.788 kb on - strand, within Atu6018at 27.819 kb on - strand, within Atu6018at 27.825 kb on + strand, within Atu6018at 27.853 kb on + strand, within Atu6018at 27.856 kb on - strand, within Atu6018at 27.904 kb on + strand, within Atu6018at 27.907 kb on - strand, within Atu6018at 27.926 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.956 kb on - strand, within Atu6018at 27.965 kb on - strand, within Atu6018at 27.998 kb on - strand, within Atu6018at 27.998 kb on - strand, within Atu6018at 28.050 kb on + strand, within Atu6018at 28.055 kb on + strand, within Atu6018at 28.055 kb on + strand, within Atu6018at 28.058 kb on - strand, within Atu6018at 28.063 kb on - strand, within Atu6018at 28.063 kb on - strand, within Atu6018at 28.064 kb on + strand, within Atu6018at 28.121 kb on + strand, within Atu6018at 28.136 kb on + strandat 28.145 kb on - strandat 28.205 kb on + strandat 28.210 kb on + strandat 28.261 kb on - strandat 28.276 kb on + strandat 28.332 kb on - strandat 28.366 kb on - strandat 28.387 kb on + strandat 28.400 kb on + strandat 28.408 kb on - strandat 28.408 kb on - strandat 28.413 kb on + strandat 28.427 kb on + strand, within Atu6019at 28.443 kb on + strand, within Atu6019at 28.450 kb on + strand, within Atu6019at 28.480 kb on - strand, within Atu6019at 28.482 kb on + strand, within Atu6019at 28.515 kb on - strand, within Atu6019at 28.539 kb on + strand, within Atu6019at 28.592 kb on - strand, within Atu6019at 28.598 kb on + strand, within Atu6019at 28.657 kb on - strand, within Atu6019at 28.670 kb on + strand, within Atu6019at 28.675 kb on + strand, within Atu6019at 28.678 kb on - strand, within Atu6019at 28.765 kb on - strand, within Atu6019at 28.774 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.784 kb on + strand, within Atu6019at 28.789 kb on - strand, within Atu6019at 28.789 kb on - strand, within Atu6019at 28.795 kb on + strand, within Atu6019at 28.795 kb on + strand, within Atu6019at 28.803 kb on - strand, within Atu6019at 28.805 kb on + strand, within Atu6019at 28.805 kb on + strand, within Atu6019at 28.813 kb on - strand, within Atu6019at 28.863 kb on + strand, within Atu6019at 28.869 kb on - strand, within Atu6019at 29.003 kb on - strand, within Atu6019at 29.005 kb on + strand, within Atu6019at 29.025 kb on - strand, within Atu6019at 29.044 kb on - strand, within Atu6019at 29.049 kb on - strand, within Atu6019at 29.091 kb on - strand, within Atu6019at 29.091 kb on - strand, within Atu6019at 29.094 kb on - strand, within Atu6019at 29.094 kb on - strand, within Atu6019at 29.127 kb on - strand, within Atu6019at 29.189 kb on + strand, within Atu6019at 29.189 kb on + strand, within Atu6019at 29.195 kb on - strand, within Atu6019at 29.197 kb on - strand, within Atu6019at 29.197 kb on - strand, within Atu6019at 29.202 kb on + strand, within Atu6019at 29.202 kb on + strand, within Atu6019at 29.210 kb on - strand, within Atu6019at 29.239 kb on + strand, within Atu6019at 29.255 kb on - strand, within Atu6019at 29.266 kb on + strand, within Atu6019at 29.266 kb on + strand, within Atu6019at 29.271 kb on + strand, within Atu6019at 29.403 kb on - strand, within Atu6019at 29.405 kb on + strand, within Atu6019at 29.413 kb on - strand, within Atu6019at 29.423 kb on + strand, within Atu6019at 29.423 kb on - strand, within Atu6019at 29.470 kb on + strand, within Atu6019at 29.481 kb on + strand, within Atu6019at 29.562 kb on + strandat 29.565 kb on - strandat 29.594 kb on + strandat 29.626 kb on - strandat 29.700 kb on + strandat 29.754 kb on + strand, within Atu6020at 29.754 kb on + strand, within Atu6020at 29.820 kb on - strand, within Atu6020at 29.832 kb on - strand, within Atu6020at 29.832 kb on - strand, within Atu6020at 29.834 kb on + strand, within Atu6020at 29.885 kb on - strand, within Atu6020at 29.931 kb on - strand, within Atu6020at 29.990 kb on - strandat 30.034 kb on + strandat 30.082 kb on + strandat 30.129 kb on - strand, within Atu6021at 30.181 kb on + strand, within Atu6021at 30.189 kb on - strand, within Atu6021at 30.199 kb on - strand, within Atu6021at 30.295 kb on - strand, within Atu6021at 30.354 kb on + strand, within Atu6021at 30.455 kb on - strand, within Atu6021at 30.455 kb on - strand, within Atu6021at 30.500 kb on - strand, within Atu6021at 30.504 kb on + strand, within Atu6021at 30.521 kb on - strand, within Atu6021at 30.545 kb on + strand, within Atu6021at 30.583 kb on + strand, within Atu6021at 30.583 kb on + strand, within Atu6021at 30.588 kb on + strand, within Atu6021at 30.601 kb on - strand, within Atu6021at 30.621 kb on + strand, within Atu6021at 30.629 kb on - strand, within Atu6021at 30.635 kb on + strand, within Atu6021at 30.643 kb on - strand, within Atu6021at 30.652 kb on + strand, within Atu6021at 30.657 kb on + strand, within Atu6021at 30.657 kb on + strand, within Atu6021at 30.657 kb on + strand, within Atu6021at 30.660 kb on - strand, within Atu6021at 30.660 kb on - strand, within Atu6021at 30.660 kb on - strand, within Atu6021

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01
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27,301 + -1.2
27,312 + +0.1
27,387 - Atu6018 0.14 +0.1
27,400 - Atu6018 0.15 -0.3
27,450 + Atu6018 0.20 -1.3
27,450 + Atu6018 0.20 -1.7
27,460 + Atu6018 0.21 -1.6
27,460 + Atu6018 0.21 -0.2
27,468 - Atu6018 0.22 +1.3
27,511 + Atu6018 0.27 -0.4
27,521 + Atu6018 0.28 +0.9
27,544 - Atu6018 0.30 -1.5
27,551 + Atu6018 0.31 +0.7
27,598 + Atu6018 0.36 -1.7
27,608 + Atu6018 0.37 -1.4
27,698 + Atu6018 0.46 +0.3
27,703 + Atu6018 0.46 +1.0
27,735 + Atu6018 0.50 -1.1
27,754 - Atu6018 0.52 -1.7
27,782 + Atu6018 0.54 +0.6
27,785 - Atu6018 0.55 -1.3
27,788 - Atu6018 0.55 -0.6
27,788 - Atu6018 0.55 -0.5
27,819 - Atu6018 0.58 -1.2
27,825 + Atu6018 0.59 -1.0
27,853 + Atu6018 0.62 -0.4
27,856 - Atu6018 0.62 -0.1
27,904 + Atu6018 0.67 -2.1
27,907 - Atu6018 0.67 -1.3
27,926 + Atu6018 0.69 +0.3
27,936 + Atu6018 0.70 -0.9
27,936 + Atu6018 0.70 -0.6
27,936 + Atu6018 0.70 -0.8
27,956 - Atu6018 0.72 -1.0
27,965 - Atu6018 0.73 -1.1
27,998 - Atu6018 0.77 -0.3
27,998 - Atu6018 0.77 +1.3
28,050 + Atu6018 0.82 -1.2
28,055 + Atu6018 0.82 -0.1
28,055 + Atu6018 0.82 -0.7
28,058 - Atu6018 0.83 -2.4
28,063 - Atu6018 0.83 -0.4
28,063 - Atu6018 0.83 -0.5
28,064 + Atu6018 0.83 -1.6
28,121 + Atu6018 0.89 -1.2
28,136 + -0.8
28,145 - -1.2
28,205 + -1.3
28,210 + -0.4
28,261 - -0.1
28,276 + +0.2
28,332 - -0.0
28,366 - -1.8
28,387 + -0.7
28,400 + -1.6
28,408 - -1.4
28,408 - -1.7
28,413 + -2.8
28,427 + Atu6019 0.11 -2.1
28,443 + Atu6019 0.12 -2.6
28,450 + Atu6019 0.12 -1.8
28,480 - Atu6019 0.15 -0.6
28,482 + Atu6019 0.15 -1.2
28,515 - Atu6019 0.17 -2.4
28,539 + Atu6019 0.19 -1.9
28,592 - Atu6019 0.22 -1.6
28,598 + Atu6019 0.23 -3.0
28,657 - Atu6019 0.27 -2.9
28,670 + Atu6019 0.28 -3.9
28,675 + Atu6019 0.28 +0.7
28,678 - Atu6019 0.29 -3.2
28,765 - Atu6019 0.35 -1.5
28,774 + Atu6019 0.35 -2.4
28,781 + Atu6019 0.36 -1.1
28,781 + Atu6019 0.36 -1.0
28,781 + Atu6019 0.36 -2.1
28,784 + Atu6019 0.36 -2.0
28,789 - Atu6019 0.36 -0.6
28,789 - Atu6019 0.36 +0.3
28,795 + Atu6019 0.37 -1.7
28,795 + Atu6019 0.37 -3.5
28,803 - Atu6019 0.37 -1.9
28,805 + Atu6019 0.37 -0.3
28,805 + Atu6019 0.37 -1.9
28,813 - Atu6019 0.38 -3.7
28,863 + Atu6019 0.42 -0.7
28,869 - Atu6019 0.42 -2.1
29,003 - Atu6019 0.51 -1.3
29,005 + Atu6019 0.52 -2.0
29,025 - Atu6019 0.53 -1.4
29,044 - Atu6019 0.54 -1.6
29,049 - Atu6019 0.55 -1.3
29,091 - Atu6019 0.58 +0.3
29,091 - Atu6019 0.58 -3.2
29,094 - Atu6019 0.58 -1.8
29,094 - Atu6019 0.58 +1.3
29,127 - Atu6019 0.60 -2.0
29,189 + Atu6019 0.65 -1.4
29,189 + Atu6019 0.65 -2.1
29,195 - Atu6019 0.65 -2.0
29,197 - Atu6019 0.65 -1.7
29,197 - Atu6019 0.65 +0.3
29,202 + Atu6019 0.65 -1.5
29,202 + Atu6019 0.65 -1.8
29,210 - Atu6019 0.66 -1.8
29,239 + Atu6019 0.68 -2.9
29,255 - Atu6019 0.69 -2.2
29,266 + Atu6019 0.70 -2.2
29,266 + Atu6019 0.70 -1.7
29,271 + Atu6019 0.70 -3.6
29,403 - Atu6019 0.80 -1.7
29,405 + Atu6019 0.80 -1.4
29,413 - Atu6019 0.80 -1.0
29,423 + Atu6019 0.81 -1.3
29,423 - Atu6019 0.81 -1.7
29,470 + Atu6019 0.84 -0.5
29,481 + Atu6019 0.85 -0.7
29,562 + -1.5
29,565 - +0.6
29,594 + -2.3
29,626 - -1.2
29,700 + -1.4
29,754 + Atu6020 0.22 -1.5
29,754 + Atu6020 0.22 -2.1
29,820 - Atu6020 0.45 -0.3
29,832 - Atu6020 0.49 -2.0
29,832 - Atu6020 0.49 -1.3
29,834 + Atu6020 0.50 -2.8
29,885 - Atu6020 0.67 -2.1
29,931 - Atu6020 0.83 -1.5
29,990 - -1.5
30,034 + -1.7
30,082 + -1.7
30,129 - Atu6021 0.13 -2.6
30,181 + Atu6021 0.18 -0.7
30,189 - Atu6021 0.19 -3.5
30,199 - Atu6021 0.20 -1.9
30,295 - Atu6021 0.28 -1.8
30,354 + Atu6021 0.34 -2.5
30,455 - Atu6021 0.43 -2.3
30,455 - Atu6021 0.43 -1.0
30,500 - Atu6021 0.47 -2.1
30,504 + Atu6021 0.47 -1.7
30,521 - Atu6021 0.49 -1.7
30,545 + Atu6021 0.51 -0.7
30,583 + Atu6021 0.54 -0.9
30,583 + Atu6021 0.54 -2.4
30,588 + Atu6021 0.55 -4.6
30,601 - Atu6021 0.56 -1.3
30,621 + Atu6021 0.57 -0.7
30,629 - Atu6021 0.58 -1.9
30,635 + Atu6021 0.59 -2.3
30,643 - Atu6021 0.59 -1.1
30,652 + Atu6021 0.60 -2.2
30,657 + Atu6021 0.61 -2.4
30,657 + Atu6021 0.61 -2.1
30,657 + Atu6021 0.61 -0.4
30,660 - Atu6021 0.61 -1.8
30,660 - Atu6021 0.61 -1.9
30,660 - Atu6021 0.61 +0.3

Or see this region's nucleotide sequence