Strain Fitness in Agrobacterium fabrum C58 around Atu4340

Experiment: Bethi_Library_OD0.01

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.01
1,471,428	-		Atu4338	0.72	+0.4
1,471,462	-		Atu4338	0.78	-0.1
1,471,509	+		Atu4338	0.88	-0.3
1,471,517	-		Atu4338	0.89	+0.2
1,471,517	-		Atu4338	0.89	+0.0
1,471,519	+		Atu4338	0.90	+0.0
1,471,531	+				-0.2
1,471,541	-				-2.0
1,471,556	-				+0.8
1,471,662	+		Atu4339	0.12	+1.4
1,471,670	-		Atu4339	0.13	+0.4
1,471,670	-		Atu4339	0.13	+0.9
1,471,670	-		Atu4339	0.13	+0.1
1,471,757	+		Atu4339	0.23	+0.5
1,471,770	-		Atu4339	0.25	-0.9
1,471,864	-		Atu4339	0.36	-0.2
1,471,908	+		Atu4339	0.42	+0.1
1,472,021	-		Atu4339	0.55	-0.6
1,472,023	+		Atu4339	0.56	-1.4
1,472,226	-		Atu4339	0.80	-1.4
1,472,512	+				-0.3
1,472,512	+				-0.2
1,472,512	+				+0.4
1,472,629	-		Atu4340	0.17	+1.2
1,472,645	-		Atu4340	0.19	-0.4
1,472,656	+		Atu4340	0.19	+1.0
1,472,668	+		Atu4340	0.20	+0.5
1,472,730	+		Atu4340	0.25	+1.0
1,472,800	+		Atu4340	0.30	+1.7
1,472,821	+		Atu4340	0.31	+2.7
1,473,032	-		Atu4340	0.46	+1.4
1,473,081	+		Atu4340	0.50	-1.2
1,473,091	+		Atu4340	0.51	-0.6
1,473,092	+		Atu4340	0.51	+0.2
1,473,097	+		Atu4340	0.51	+0.7
1,473,105	-		Atu4340	0.52	+0.4
1,473,105	-		Atu4340	0.52	-0.1
1,473,167	+		Atu4340	0.56	+0.0
1,473,175	-		Atu4340	0.57	+0.2
1,473,182	-		Atu4340	0.57	-0.2
1,473,187	-		Atu4340	0.57	+0.0
1,473,245	+		Atu4340	0.62	+0.4
1,473,452	-		Atu4340	0.76	+0.5
1,473,631	+		Atu4340	0.89	-0.3
1,473,631	+		Atu4340	0.89	+0.2
1,473,631	+		Atu4340	0.89	+2.4
1,473,631	+		Atu4340	0.89	+0.2
1,473,810	-				-0.3
1,473,856	-				+0.8
1,473,867	-				+0.2
1,473,887	-				+0.3
1,473,962	+				+0.4
1,473,968	-				+0.4
1,474,026	-		Atu4341	0.13	+0.5
1,474,144	-		Atu4341	0.21	+1.6
1,474,167	+		Atu4341	0.22	+1.6
1,474,215	+		Atu4341	0.26	+0.8
1,474,215	+		Atu4341	0.26	-0.2
1,474,281	-		Atu4341	0.30	+1.0
1,474,330	+		Atu4341	0.33	+0.3
1,474,511	-		Atu4341	0.46	-0.2
1,474,574	-		Atu4341	0.50	-0.7
1,474,696	-		Atu4341	0.58	+1.2