Strain Fitness in Agrobacterium fabrum C58 around Atu5076

Experiment: Bethi_Library_OD0.01

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5074 and Atu5075 are separated by 60 nucleotidesAtu5075 and Atu5076 are separated by 3 nucleotidesAtu5076 and Atu5077 are separated by 173 nucleotidesAtu5077 and Atu8057 are separated by 412 nucleotides Atu5074: Atu5074 - iron alcohol dehydrogenase, at 74,057 to 75,178 Atu5074 Atu5075: Atu5075 - GntR family transcriptional regulator, at 75,239 to 75,943 Atu5075 Atu5076: Atu5076 - hypothetical protein, at 75,947 to 76,975 Atu5076 Atu5077: Atu5077 - hypothetical protein, at 77,149 to 77,502 Atu5077 Atu8057: Atu8057 - hypothetical protein, at 77,915 to 78,244 Atu8057 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 74.967 kb on + strand, within Atu5074at 74.972 kb on + strand, within Atu5074at 74.995 kb on - strand, within Atu5074at 75.084 kb on - strandat 75.086 kb on + strandat 75.180 kb on - strandat 75.183 kb on + strandat 75.183 kb on + strandat 75.204 kb on - strandat 75.204 kb on - strandat 75.322 kb on - strand, within Atu5075at 75.368 kb on + strand, within Atu5075at 75.376 kb on - strand, within Atu5075at 75.392 kb on + strand, within Atu5075at 75.400 kb on - strand, within Atu5075at 75.467 kb on + strand, within Atu5075at 75.469 kb on + strand, within Atu5075at 75.472 kb on + strand, within Atu5075at 75.545 kb on + strand, within Atu5075at 75.574 kb on + strand, within Atu5075at 75.606 kb on - strand, within Atu5075at 75.765 kb on + strand, within Atu5075at 75.771 kb on + strand, within Atu5075at 75.797 kb on + strand, within Atu5075at 75.805 kb on + strand, within Atu5075at 75.812 kb on - strand, within Atu5075at 75.918 kb on - strandat 76.008 kb on - strandat 76.065 kb on - strand, within Atu5076at 76.074 kb on - strand, within Atu5076at 76.090 kb on + strand, within Atu5076at 76.096 kb on + strand, within Atu5076at 76.102 kb on + strand, within Atu5076at 76.102 kb on + strand, within Atu5076at 76.110 kb on - strand, within Atu5076at 76.114 kb on - strand, within Atu5076at 76.139 kb on + strand, within Atu5076at 76.175 kb on + strand, within Atu5076at 76.183 kb on - strand, within Atu5076at 76.221 kb on - strand, within Atu5076at 76.243 kb on + strand, within Atu5076at 76.243 kb on + strand, within Atu5076at 76.258 kb on - strand, within Atu5076at 76.286 kb on - strand, within Atu5076at 76.286 kb on - strand, within Atu5076at 76.286 kb on - strand, within Atu5076at 76.305 kb on + strand, within Atu5076at 76.308 kb on - strand, within Atu5076at 76.323 kb on - strand, within Atu5076at 76.343 kb on - strand, within Atu5076at 76.345 kb on + strand, within Atu5076at 76.462 kb on + strand, within Atu5076at 76.556 kb on - strand, within Atu5076at 76.804 kb on - strand, within Atu5076at 76.813 kb on + strand, within Atu5076at 76.934 kb on + strandat 76.937 kb on - strandat 76.942 kb on - strandat 76.942 kb on - strandat 76.942 kb on - strandat 77.068 kb on + strandat 77.094 kb on + strandat 77.196 kb on + strand, within Atu5077at 77.196 kb on + strand, within Atu5077at 77.204 kb on - strand, within Atu5077at 77.204 kb on - strand, within Atu5077at 77.211 kb on + strand, within Atu5077at 77.219 kb on - strand, within Atu5077at 77.281 kb on - strand, within Atu5077at 77.294 kb on + strand, within Atu5077at 77.302 kb on - strand, within Atu5077at 77.315 kb on + strand, within Atu5077at 77.366 kb on - strand, within Atu5077at 77.391 kb on - strand, within Atu5077at 77.392 kb on + strand, within Atu5077at 77.392 kb on + strand, within Atu5077at 77.400 kb on - strand, within Atu5077at 77.400 kb on - strand, within Atu5077at 77.455 kb on - strand, within Atu5077at 77.476 kb on + strandat 77.484 kb on - strandat 77.504 kb on - strandat 77.511 kb on + strandat 77.511 kb on + strandat 77.511 kb on + strandat 77.511 kb on + strandat 77.519 kb on - strandat 77.519 kb on - strandat 77.519 kb on - strandat 77.519 kb on - strandat 77.555 kb on - strandat 77.588 kb on - strandat 77.628 kb on - strandat 77.724 kb on + strandat 77.758 kb on + strandat 77.758 kb on + strandat 77.758 kb on + strandat 77.758 kb on + strandat 77.766 kb on - strandat 77.766 kb on - strandat 77.815 kb on + strandat 77.911 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01
remove
74,967 + Atu5074 0.81 -0.0
74,972 + Atu5074 0.82 -0.3
74,995 - Atu5074 0.84 +0.6
75,084 - -0.0
75,086 + -0.1
75,180 - +0.2
75,183 + +0.5
75,183 + -0.2
75,204 - -0.5
75,204 - -1.5
75,322 - Atu5075 0.12 -0.3
75,368 + Atu5075 0.18 +0.2
75,376 - Atu5075 0.19 +1.6
75,392 + Atu5075 0.22 -1.2
75,400 - Atu5075 0.23 -0.2
75,467 + Atu5075 0.32 -0.4
75,469 + Atu5075 0.33 +2.6
75,472 + Atu5075 0.33 +0.2
75,545 + Atu5075 0.43 -1.8
75,574 + Atu5075 0.48 +0.6
75,606 - Atu5075 0.52 -0.5
75,765 + Atu5075 0.75 -0.0
75,771 + Atu5075 0.75 +0.3
75,797 + Atu5075 0.79 -0.5
75,805 + Atu5075 0.80 +0.1
75,812 - Atu5075 0.81 +0.1
75,918 - -0.7
76,008 - +0.9
76,065 - Atu5076 0.11 +0.3
76,074 - Atu5076 0.12 -0.7
76,090 + Atu5076 0.14 -0.0
76,096 + Atu5076 0.14 +0.6
76,102 + Atu5076 0.15 -0.4
76,102 + Atu5076 0.15 -0.6
76,110 - Atu5076 0.16 +0.5
76,114 - Atu5076 0.16 -0.7
76,139 + Atu5076 0.19 -1.1
76,175 + Atu5076 0.22 -0.3
76,183 - Atu5076 0.23 -0.4
76,221 - Atu5076 0.27 -0.4
76,243 + Atu5076 0.29 -0.5
76,243 + Atu5076 0.29 -0.7
76,258 - Atu5076 0.30 -0.9
76,286 - Atu5076 0.33 -0.7
76,286 - Atu5076 0.33 -0.1
76,286 - Atu5076 0.33 -0.8
76,305 + Atu5076 0.35 +0.1
76,308 - Atu5076 0.35 -1.4
76,323 - Atu5076 0.37 -0.2
76,343 - Atu5076 0.38 -0.3
76,345 + Atu5076 0.39 -0.4
76,462 + Atu5076 0.50 +0.8
76,556 - Atu5076 0.59 -1.8
76,804 - Atu5076 0.83 +0.2
76,813 + Atu5076 0.84 +0.2
76,934 + -0.2
76,937 - +0.4
76,942 - -0.2
76,942 - +0.3
76,942 - -0.8
77,068 + -0.6
77,094 + -1.0
77,196 + Atu5077 0.13 +0.1
77,196 + Atu5077 0.13 +0.4
77,204 - Atu5077 0.16 +0.8
77,204 - Atu5077 0.16 -0.4
77,211 + Atu5077 0.18 -1.2
77,219 - Atu5077 0.20 -1.1
77,281 - Atu5077 0.37 -0.0
77,294 + Atu5077 0.41 +1.3
77,302 - Atu5077 0.43 +1.4
77,315 + Atu5077 0.47 +0.4
77,366 - Atu5077 0.61 -0.2
77,391 - Atu5077 0.68 -0.0
77,392 + Atu5077 0.69 -0.5
77,392 + Atu5077 0.69 -1.4
77,400 - Atu5077 0.71 -0.0
77,400 - Atu5077 0.71 -1.4
77,455 - Atu5077 0.86 +0.0
77,476 + -0.6
77,484 - +0.3
77,504 - +0.6
77,511 + -1.5
77,511 + +0.0
77,511 + -1.2
77,511 + +0.1
77,519 - -0.3
77,519 - +0.3
77,519 - -0.5
77,519 - -1.8
77,555 - -0.1
77,588 - +0.6
77,628 - -1.4
77,724 + -0.3
77,758 + -0.4
77,758 + +1.1
77,758 + +0.1
77,758 + -1.5
77,766 - +0.1
77,766 - -0.1
77,815 + -0.7
77,911 - -0.1

Or see this region's nucleotide sequence