Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6177 and Atu6178 are separated by 218 nucleotides Atu6178 and Atu6179 are separated by 141 nucleotides Atu6179 and Atu6180 are separated by 2 nucleotides
Atu6177: Atu6177 - component of type IV secretion system, at 192,293 to 193,327
Atu6177
Atu6178: Atu6178 - two component response regulator, at 193,546 to 194,307
Atu6178
Atu6179: Atu6179 - virA/G regulated protein, at 194,449 to 195,057
Atu6179
Atu6180: Atu6180 - virA/G regulated protein, at 195,060 to 195,755
Atu6180
Position (kb)
193
194
195 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 192.578 kb on - strand, within Atu6177 at 192.593 kb on - strand, within Atu6177 at 192.638 kb on + strand, within Atu6177 at 192.664 kb on - strand, within Atu6177 at 192.751 kb on - strand, within Atu6177 at 192.762 kb on + strand, within Atu6177 at 192.785 kb on + strand, within Atu6177 at 192.800 kb on + strand, within Atu6177 at 192.833 kb on + strand, within Atu6177 at 192.834 kb on - strand, within Atu6177 at 192.838 kb on + strand, within Atu6177 at 192.841 kb on - strand, within Atu6177 at 192.841 kb on - strand, within Atu6177 at 192.841 kb on - strand, within Atu6177 at 192.915 kb on + strand, within Atu6177 at 192.915 kb on + strand, within Atu6177 at 192.923 kb on - strand, within Atu6177 at 192.925 kb on + strand, within Atu6177 at 192.945 kb on - strand, within Atu6177 at 192.947 kb on + strand, within Atu6177 at 192.981 kb on + strand, within Atu6177 at 192.982 kb on + strand, within Atu6177 at 192.989 kb on - strand, within Atu6177 at 192.989 kb on - strand, within Atu6177 at 192.989 kb on - strand, within Atu6177 at 192.989 kb on - strand, within Atu6177 at 192.994 kb on + strand, within Atu6177 at 193.003 kb on + strand, within Atu6177 at 193.005 kb on + strand, within Atu6177 at 193.005 kb on + strand, within Atu6177 at 193.013 kb on - strand, within Atu6177 at 193.015 kb on + strand, within Atu6177 at 193.056 kb on + strand, within Atu6177 at 193.105 kb on - strand, within Atu6177 at 193.175 kb on - strand, within Atu6177 at 193.216 kb on + strand, within Atu6177 at 193.216 kb on - strand, within Atu6177 at 193.245 kb on + strand at 193.291 kb on - strand at 193.423 kb on - strand at 193.423 kb on - strand at 193.456 kb on - strand at 193.478 kb on - strand at 193.492 kb on + strand at 193.537 kb on - strand at 193.574 kb on - strand at 193.655 kb on + strand, within Atu6178 at 193.663 kb on - strand, within Atu6178 at 193.663 kb on - strand, within Atu6178 at 193.663 kb on - strand, within Atu6178 at 193.696 kb on + strand, within Atu6178 at 193.696 kb on + strand, within Atu6178 at 193.707 kb on - strand, within Atu6178 at 193.714 kb on - strand, within Atu6178 at 193.714 kb on - strand, within Atu6178 at 193.714 kb on - strand, within Atu6178 at 193.895 kb on - strand, within Atu6178 at 193.917 kb on + strand, within Atu6178 at 193.941 kb on + strand, within Atu6178 at 193.941 kb on + strand, within Atu6178 at 193.941 kb on + strand, within Atu6178 at 193.941 kb on + strand, within Atu6178 at 193.949 kb on - strand, within Atu6178 at 193.949 kb on - strand, within Atu6178 at 193.949 kb on - strand, within Atu6178 at 193.987 kb on + strand, within Atu6178 at 194.031 kb on + strand, within Atu6178 at 194.040 kb on + strand, within Atu6178 at 194.041 kb on - strand, within Atu6178 at 194.046 kb on + strand, within Atu6178 at 194.060 kb on + strand, within Atu6178 at 194.061 kb on + strand, within Atu6178 at 194.108 kb on + strand, within Atu6178 at 194.108 kb on + strand, within Atu6178 at 194.109 kb on - strand, within Atu6178 at 194.109 kb on - strand, within Atu6178 at 194.129 kb on + strand, within Atu6178 at 194.146 kb on + strand, within Atu6178 at 194.152 kb on + strand, within Atu6178 at 194.152 kb on + strand, within Atu6178 at 194.152 kb on + strand, within Atu6178 at 194.152 kb on - strand, within Atu6178 at 194.152 kb on - strand, within Atu6178 at 194.157 kb on - strand, within Atu6178 at 194.165 kb on + strand, within Atu6178 at 194.173 kb on - strand, within Atu6178 at 194.216 kb on - strand, within Atu6178 at 194.219 kb on + strand, within Atu6178 at 194.219 kb on + strand, within Atu6178 at 194.227 kb on - strand, within Atu6178 at 194.227 kb on - strand, within Atu6178 at 194.237 kb on - strand at 194.246 kb on + strand at 194.269 kb on + strand at 194.302 kb on + strand at 194.317 kb on + strand at 194.385 kb on + strand at 194.385 kb on + strand at 194.404 kb on + strand at 194.409 kb on + strand at 194.412 kb on - strand at 194.431 kb on + strand at 194.437 kb on + strand at 194.439 kb on - strand at 194.453 kb on - strand at 194.568 kb on + strand, within Atu6179 at 194.647 kb on - strand, within Atu6179 at 194.669 kb on + strand, within Atu6179 at 194.702 kb on - strand, within Atu6179 at 194.728 kb on + strand, within Atu6179 at 194.804 kb on - strand, within Atu6179 at 194.868 kb on + strand, within Atu6179 at 194.868 kb on + strand, within Atu6179 at 194.876 kb on - strand, within Atu6179 at 194.896 kb on + strand, within Atu6179 at 194.904 kb on - strand, within Atu6179 at 194.904 kb on - strand, within Atu6179 at 195.040 kb on - strand at 195.059 kb on - strand at 195.066 kb on + strand at 195.066 kb on + strand at 195.074 kb on - strand at 195.074 kb on - strand at 195.074 kb on - strand at 195.104 kb on - strand at 195.165 kb on - strand, within Atu6180 at 195.237 kb on - strand, within Atu6180 at 195.239 kb on + strand, within Atu6180 at 195.245 kb on - strand, within Atu6180 at 195.272 kb on - strand, within Atu6180
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 192,578 - Atu6177 0.28 +0.2 192,593 - Atu6177 0.29 +1.3 192,638 + Atu6177 0.33 +0.8 192,664 - Atu6177 0.36 +0.2 192,751 - Atu6177 0.44 -1.0 192,762 + Atu6177 0.45 +0.4 192,785 + Atu6177 0.48 +0.8 192,800 + Atu6177 0.49 +0.9 192,833 + Atu6177 0.52 +1.0 192,834 - Atu6177 0.52 -0.6 192,838 + Atu6177 0.53 +0.6 192,841 - Atu6177 0.53 +0.6 192,841 - Atu6177 0.53 -2.0 192,841 - Atu6177 0.53 +0.6 192,915 + Atu6177 0.60 -0.2 192,915 + Atu6177 0.60 +0.7 192,923 - Atu6177 0.61 -0.5 192,925 + Atu6177 0.61 +0.2 192,945 - Atu6177 0.63 +0.1 192,947 + Atu6177 0.63 -0.2 192,981 + Atu6177 0.66 -0.1 192,982 + Atu6177 0.67 +0.7 192,989 - Atu6177 0.67 +0.4 192,989 - Atu6177 0.67 +0.5 192,989 - Atu6177 0.67 -0.2 192,989 - Atu6177 0.67 +0.5 192,994 + Atu6177 0.68 -1.7 193,003 + Atu6177 0.69 +0.2 193,005 + Atu6177 0.69 +0.7 193,005 + Atu6177 0.69 -0.5 193,013 - Atu6177 0.70 -0.1 193,015 + Atu6177 0.70 +1.9 193,056 + Atu6177 0.74 -0.2 193,105 - Atu6177 0.78 +0.1 193,175 - Atu6177 0.85 +0.3 193,216 + Atu6177 0.89 +0.0 193,216 - Atu6177 0.89 +0.8 193,245 + +0.2 193,291 - -0.2 193,423 - +0.9 193,423 - -0.2 193,456 - +0.8 193,478 - -0.3 193,492 + -0.8 193,537 - +0.1 193,574 - -0.0 193,655 + Atu6178 0.14 -0.1 193,663 - Atu6178 0.15 -0.4 193,663 - Atu6178 0.15 -1.2 193,663 - Atu6178 0.15 -2.6 193,696 + Atu6178 0.20 -1.1 193,696 + Atu6178 0.20 -2.2 193,707 - Atu6178 0.21 -2.3 193,714 - Atu6178 0.22 -1.8 193,714 - Atu6178 0.22 -2.1 193,714 - Atu6178 0.22 -2.3 193,895 - Atu6178 0.46 -2.5 193,917 + Atu6178 0.49 -0.7 193,941 + Atu6178 0.52 -0.4 193,941 + Atu6178 0.52 -1.3 193,941 + Atu6178 0.52 -1.8 193,941 + Atu6178 0.52 -1.9 193,949 - Atu6178 0.53 -1.6 193,949 - Atu6178 0.53 -0.4 193,949 - Atu6178 0.53 -0.7 193,987 + Atu6178 0.58 -1.2 194,031 + Atu6178 0.64 -1.0 194,040 + Atu6178 0.65 -1.3 194,041 - Atu6178 0.65 -2.0 194,046 + Atu6178 0.66 -2.3 194,060 + Atu6178 0.67 +1.3 194,061 + Atu6178 0.68 -2.5 194,108 + Atu6178 0.74 -1.9 194,108 + Atu6178 0.74 -1.5 194,109 - Atu6178 0.74 -1.5 194,109 - Atu6178 0.74 +1.1 194,129 + Atu6178 0.77 -0.6 194,146 + Atu6178 0.79 -2.6 194,152 + Atu6178 0.80 -0.4 194,152 + Atu6178 0.80 -0.5 194,152 + Atu6178 0.80 -2.0 194,152 - Atu6178 0.80 -1.0 194,152 - Atu6178 0.80 -1.4 194,157 - Atu6178 0.80 -1.3 194,165 + Atu6178 0.81 -0.4 194,173 - Atu6178 0.82 -2.5 194,216 - Atu6178 0.88 -1.1 194,219 + Atu6178 0.88 -1.0 194,219 + Atu6178 0.88 -0.9 194,227 - Atu6178 0.89 -0.9 194,227 - Atu6178 0.89 -1.5 194,237 - -0.8 194,246 + -1.8 194,269 + -0.1 194,302 + +0.0 194,317 + -0.2 194,385 + -1.0 194,385 + -0.1 194,404 + -1.0 194,409 + -0.1 194,412 - +1.9 194,431 + -0.1 194,437 + +1.2 194,439 - -0.3 194,453 - -1.3 194,568 + Atu6179 0.20 -0.5 194,647 - Atu6179 0.33 -1.0 194,669 + Atu6179 0.36 -1.7 194,702 - Atu6179 0.42 +0.5 194,728 + Atu6179 0.46 +0.0 194,804 - Atu6179 0.58 +1.1 194,868 + Atu6179 0.69 +0.8 194,868 + Atu6179 0.69 -0.2 194,876 - Atu6179 0.70 +1.7 194,896 + Atu6179 0.73 +1.0 194,904 - Atu6179 0.75 -1.0 194,904 - Atu6179 0.75 -0.2 195,040 - -0.7 195,059 - +2.1 195,066 + -1.7 195,066 + +0.9 195,074 - -1.0 195,074 - -0.3 195,074 - -0.1 195,104 - +0.4 195,165 - Atu6180 0.15 +0.8 195,237 - Atu6180 0.25 +1.0 195,239 + Atu6180 0.26 +0.7 195,245 - Atu6180 0.27 -0.1 195,272 - Atu6180 0.30 -0.5
Or see this region's nucleotide sequence