Strain Fitness in Agrobacterium fabrum C58 around Atu6178

Experiment: Bethi_Library_OD0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6177 and Atu6178 are separated by 218 nucleotidesAtu6178 and Atu6179 are separated by 141 nucleotidesAtu6179 and Atu6180 are separated by 2 nucleotides Atu6177: Atu6177 - component of type IV secretion system, at 192,293 to 193,327 Atu6177 Atu6178: Atu6178 - two component response regulator, at 193,546 to 194,307 Atu6178 Atu6179: Atu6179 - virA/G regulated protein, at 194,449 to 195,057 Atu6179 Atu6180: Atu6180 - virA/G regulated protein, at 195,060 to 195,755 Atu6180 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 192.578 kb on - strand, within Atu6177at 192.593 kb on - strand, within Atu6177at 192.638 kb on + strand, within Atu6177at 192.664 kb on - strand, within Atu6177at 192.751 kb on - strand, within Atu6177at 192.762 kb on + strand, within Atu6177at 192.785 kb on + strand, within Atu6177at 192.800 kb on + strand, within Atu6177at 192.833 kb on + strand, within Atu6177at 192.834 kb on - strand, within Atu6177at 192.838 kb on + strand, within Atu6177at 192.841 kb on - strand, within Atu6177at 192.841 kb on - strand, within Atu6177at 192.841 kb on - strand, within Atu6177at 192.915 kb on + strand, within Atu6177at 192.915 kb on + strand, within Atu6177at 192.923 kb on - strand, within Atu6177at 192.925 kb on + strand, within Atu6177at 192.945 kb on - strand, within Atu6177at 192.947 kb on + strand, within Atu6177at 192.981 kb on + strand, within Atu6177at 192.982 kb on + strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.994 kb on + strand, within Atu6177at 193.003 kb on + strand, within Atu6177at 193.005 kb on + strand, within Atu6177at 193.005 kb on + strand, within Atu6177at 193.013 kb on - strand, within Atu6177at 193.015 kb on + strand, within Atu6177at 193.056 kb on + strand, within Atu6177at 193.105 kb on - strand, within Atu6177at 193.175 kb on - strand, within Atu6177at 193.216 kb on + strand, within Atu6177at 193.216 kb on - strand, within Atu6177at 193.245 kb on + strandat 193.291 kb on - strandat 193.423 kb on - strandat 193.423 kb on - strandat 193.456 kb on - strandat 193.478 kb on - strandat 193.492 kb on + strandat 193.537 kb on - strandat 193.574 kb on - strandat 193.655 kb on + strand, within Atu6178at 193.663 kb on - strand, within Atu6178at 193.663 kb on - strand, within Atu6178at 193.663 kb on - strand, within Atu6178at 193.696 kb on + strand, within Atu6178at 193.696 kb on + strand, within Atu6178at 193.707 kb on - strand, within Atu6178at 193.714 kb on - strand, within Atu6178at 193.714 kb on - strand, within Atu6178at 193.714 kb on - strand, within Atu6178at 193.895 kb on - strand, within Atu6178at 193.917 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.949 kb on - strand, within Atu6178at 193.949 kb on - strand, within Atu6178at 193.949 kb on - strand, within Atu6178at 193.987 kb on + strand, within Atu6178at 194.031 kb on + strand, within Atu6178at 194.040 kb on + strand, within Atu6178at 194.041 kb on - strand, within Atu6178at 194.046 kb on + strand, within Atu6178at 194.060 kb on + strand, within Atu6178at 194.061 kb on + strand, within Atu6178at 194.108 kb on + strand, within Atu6178at 194.108 kb on + strand, within Atu6178at 194.109 kb on - strand, within Atu6178at 194.109 kb on - strand, within Atu6178at 194.129 kb on + strand, within Atu6178at 194.146 kb on + strand, within Atu6178at 194.152 kb on + strand, within Atu6178at 194.152 kb on + strand, within Atu6178at 194.152 kb on + strand, within Atu6178at 194.152 kb on - strand, within Atu6178at 194.152 kb on - strand, within Atu6178at 194.157 kb on - strand, within Atu6178at 194.165 kb on + strand, within Atu6178at 194.173 kb on - strand, within Atu6178at 194.216 kb on - strand, within Atu6178at 194.219 kb on + strand, within Atu6178at 194.219 kb on + strand, within Atu6178at 194.227 kb on - strand, within Atu6178at 194.227 kb on - strand, within Atu6178at 194.237 kb on - strandat 194.246 kb on + strandat 194.269 kb on + strandat 194.302 kb on + strandat 194.317 kb on + strandat 194.385 kb on + strandat 194.385 kb on + strandat 194.404 kb on + strandat 194.409 kb on + strandat 194.412 kb on - strandat 194.431 kb on + strandat 194.437 kb on + strandat 194.439 kb on - strandat 194.453 kb on - strandat 194.568 kb on + strand, within Atu6179at 194.647 kb on - strand, within Atu6179at 194.669 kb on + strand, within Atu6179at 194.702 kb on - strand, within Atu6179at 194.728 kb on + strand, within Atu6179at 194.804 kb on - strand, within Atu6179at 194.868 kb on + strand, within Atu6179at 194.868 kb on + strand, within Atu6179at 194.876 kb on - strand, within Atu6179at 194.896 kb on + strand, within Atu6179at 194.904 kb on - strand, within Atu6179at 194.904 kb on - strand, within Atu6179at 195.040 kb on - strandat 195.059 kb on - strandat 195.066 kb on + strandat 195.066 kb on + strandat 195.074 kb on - strandat 195.074 kb on - strandat 195.074 kb on - strandat 195.104 kb on - strandat 195.165 kb on - strand, within Atu6180at 195.237 kb on - strand, within Atu6180at 195.239 kb on + strand, within Atu6180at 195.245 kb on - strand, within Atu6180at 195.272 kb on - strand, within Atu6180

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01
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192,578 - Atu6177 0.28 +0.2
192,593 - Atu6177 0.29 +1.3
192,638 + Atu6177 0.33 +0.8
192,664 - Atu6177 0.36 +0.2
192,751 - Atu6177 0.44 -1.0
192,762 + Atu6177 0.45 +0.4
192,785 + Atu6177 0.48 +0.8
192,800 + Atu6177 0.49 +0.9
192,833 + Atu6177 0.52 +1.0
192,834 - Atu6177 0.52 -0.6
192,838 + Atu6177 0.53 +0.6
192,841 - Atu6177 0.53 +0.6
192,841 - Atu6177 0.53 -2.0
192,841 - Atu6177 0.53 +0.6
192,915 + Atu6177 0.60 -0.2
192,915 + Atu6177 0.60 +0.7
192,923 - Atu6177 0.61 -0.5
192,925 + Atu6177 0.61 +0.2
192,945 - Atu6177 0.63 +0.1
192,947 + Atu6177 0.63 -0.2
192,981 + Atu6177 0.66 -0.1
192,982 + Atu6177 0.67 +0.7
192,989 - Atu6177 0.67 +0.4
192,989 - Atu6177 0.67 +0.5
192,989 - Atu6177 0.67 -0.2
192,989 - Atu6177 0.67 +0.5
192,994 + Atu6177 0.68 -1.7
193,003 + Atu6177 0.69 +0.2
193,005 + Atu6177 0.69 +0.7
193,005 + Atu6177 0.69 -0.5
193,013 - Atu6177 0.70 -0.1
193,015 + Atu6177 0.70 +1.9
193,056 + Atu6177 0.74 -0.2
193,105 - Atu6177 0.78 +0.1
193,175 - Atu6177 0.85 +0.3
193,216 + Atu6177 0.89 +0.0
193,216 - Atu6177 0.89 +0.8
193,245 + +0.2
193,291 - -0.2
193,423 - +0.9
193,423 - -0.2
193,456 - +0.8
193,478 - -0.3
193,492 + -0.8
193,537 - +0.1
193,574 - -0.0
193,655 + Atu6178 0.14 -0.1
193,663 - Atu6178 0.15 -0.4
193,663 - Atu6178 0.15 -1.2
193,663 - Atu6178 0.15 -2.6
193,696 + Atu6178 0.20 -1.1
193,696 + Atu6178 0.20 -2.2
193,707 - Atu6178 0.21 -2.3
193,714 - Atu6178 0.22 -1.8
193,714 - Atu6178 0.22 -2.1
193,714 - Atu6178 0.22 -2.3
193,895 - Atu6178 0.46 -2.5
193,917 + Atu6178 0.49 -0.7
193,941 + Atu6178 0.52 -0.4
193,941 + Atu6178 0.52 -1.3
193,941 + Atu6178 0.52 -1.8
193,941 + Atu6178 0.52 -1.9
193,949 - Atu6178 0.53 -1.6
193,949 - Atu6178 0.53 -0.4
193,949 - Atu6178 0.53 -0.7
193,987 + Atu6178 0.58 -1.2
194,031 + Atu6178 0.64 -1.0
194,040 + Atu6178 0.65 -1.3
194,041 - Atu6178 0.65 -2.0
194,046 + Atu6178 0.66 -2.3
194,060 + Atu6178 0.67 +1.3
194,061 + Atu6178 0.68 -2.5
194,108 + Atu6178 0.74 -1.9
194,108 + Atu6178 0.74 -1.5
194,109 - Atu6178 0.74 -1.5
194,109 - Atu6178 0.74 +1.1
194,129 + Atu6178 0.77 -0.6
194,146 + Atu6178 0.79 -2.6
194,152 + Atu6178 0.80 -0.4
194,152 + Atu6178 0.80 -0.5
194,152 + Atu6178 0.80 -2.0
194,152 - Atu6178 0.80 -1.0
194,152 - Atu6178 0.80 -1.4
194,157 - Atu6178 0.80 -1.3
194,165 + Atu6178 0.81 -0.4
194,173 - Atu6178 0.82 -2.5
194,216 - Atu6178 0.88 -1.1
194,219 + Atu6178 0.88 -1.0
194,219 + Atu6178 0.88 -0.9
194,227 - Atu6178 0.89 -0.9
194,227 - Atu6178 0.89 -1.5
194,237 - -0.8
194,246 + -1.8
194,269 + -0.1
194,302 + +0.0
194,317 + -0.2
194,385 + -1.0
194,385 + -0.1
194,404 + -1.0
194,409 + -0.1
194,412 - +1.9
194,431 + -0.1
194,437 + +1.2
194,439 - -0.3
194,453 - -1.3
194,568 + Atu6179 0.20 -0.5
194,647 - Atu6179 0.33 -1.0
194,669 + Atu6179 0.36 -1.7
194,702 - Atu6179 0.42 +0.5
194,728 + Atu6179 0.46 +0.0
194,804 - Atu6179 0.58 +1.1
194,868 + Atu6179 0.69 +0.8
194,868 + Atu6179 0.69 -0.2
194,876 - Atu6179 0.70 +1.7
194,896 + Atu6179 0.73 +1.0
194,904 - Atu6179 0.75 -1.0
194,904 - Atu6179 0.75 -0.2
195,040 - -0.7
195,059 - +2.1
195,066 + -1.7
195,066 + +0.9
195,074 - -1.0
195,074 - -0.3
195,074 - -0.1
195,104 - +0.4
195,165 - Atu6180 0.15 +0.8
195,237 - Atu6180 0.25 +1.0
195,239 + Atu6180 0.26 +0.7
195,245 - Atu6180 0.27 -0.1
195,272 - Atu6180 0.30 -0.5

Or see this region's nucleotide sequence