Strain Fitness in Agrobacterium fabrum C58 around Atu6088

Experiment: Bethi_Library_OD0.01

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.01
104,801	-				-1.5
104,815	+				-1.0
104,823	-				-0.6
104,864	-				+0.3
104,867	+				-0.1
104,885	-				+0.0
104,950	+				+1.1
105,116	+		Atu6087	0.28	+0.8
105,147	-		Atu6087	0.32	-0.8
105,218	+		Atu6087	0.41	+0.9
105,229	+		Atu6087	0.42	-0.5
105,229	+		Atu6087	0.42	-1.4
105,234	+		Atu6087	0.43	+1.1
105,237	-		Atu6087	0.43	-0.8
105,237	-		Atu6087	0.43	-0.4
105,237	-		Atu6087	0.43	-0.5
105,237	-		Atu6087	0.43	+0.5
105,239	+		Atu6087	0.43	-0.2
105,247	-		Atu6087	0.44	-1.5
105,320	+		Atu6087	0.54	-0.0
105,321	+		Atu6087	0.54	+0.5
105,333	+		Atu6087	0.56	+1.2
105,346	-		Atu6087	0.57	+0.3
105,346	-		Atu6087	0.57	-0.2
105,346	-		Atu6087	0.57	-0.8
105,351	+		Atu6087	0.58	-0.4
105,351	+		Atu6087	0.58	-0.3
105,351	+		Atu6087	0.58	-0.5
105,353	+		Atu6087	0.58	-0.0
105,353	+		Atu6087	0.58	+0.9
105,353	+		Atu6087	0.58	-0.4
105,353	+		Atu6087	0.58	-0.7
105,353	+		Atu6087	0.58	-1.3
105,353	-		Atu6087	0.58	+1.5
105,359	-		Atu6087	0.59	+1.5
105,359	-		Atu6087	0.59	-0.4
105,359	-		Atu6087	0.59	-0.3
105,359	-		Atu6087	0.59	+0.3
105,361	-		Atu6087	0.59	-0.1
105,361	-		Atu6087	0.59	-0.1
105,361	-		Atu6087	0.59	+0.9
105,389	+		Atu6087	0.63	-0.8
105,410	-		Atu6087	0.65	+0.4
105,415	-		Atu6087	0.66	-0.8
105,489	+		Atu6087	0.76	+0.2
105,533	+		Atu6087	0.81	-0.6
105,591	+		Atu6087	0.89	-0.1
105,591	+		Atu6087	0.89	-0.2
105,599	-		Atu6087	0.90	-0.3
105,612	-				-2.5
105,635	+				-1.1
105,643	-				+0.1
105,643	-				+0.3
105,719	-				-0.0
105,719	-				-0.6
105,719	-				-0.1
105,801	+		Atu6088	0.13	+0.9
105,806	+		Atu6088	0.14	-0.1
105,806	+		Atu6088	0.14	+0.3
105,806	+		Atu6088	0.14	+1.0
105,806	+		Atu6088	0.14	+1.3
105,806	+		Atu6088	0.14	-0.5
105,806	+		Atu6088	0.14	-0.7
105,806	+		Atu6088	0.14	+0.8
105,806	+		Atu6088	0.14	+0.8
105,806	+		Atu6088	0.14	-0.1
105,806	+		Atu6088	0.14	+0.2
105,806	-		Atu6088	0.14	+0.1
105,809	-		Atu6088	0.14	+0.3
105,814	-		Atu6088	0.15	-0.2
105,814	-		Atu6088	0.15	+0.3
105,814	-		Atu6088	0.15	+0.2
105,814	-		Atu6088	0.15	+0.5
105,814	-		Atu6088	0.15	+0.4
105,814	-		Atu6088	0.15	+0.3
105,814	-		Atu6088	0.15	+1.3
105,814	-		Atu6088	0.15	-0.3
105,814	-		Atu6088	0.15	+0.1
105,827	-		Atu6088	0.16	-1.3
105,849	-		Atu6088	0.18	+0.5
105,859	-		Atu6088	0.19	-0.1
105,944	-		Atu6088	0.28	+0.4
105,971	-		Atu6088	0.31	+1.1
106,030	-		Atu6088	0.37	+0.4
106,032	+		Atu6088	0.38	+1.1
106,032	+		Atu6088	0.38	+0.1
106,040	-		Atu6088	0.38	+0.3
106,040	-		Atu6088	0.38	-0.3
106,053	-		Atu6088	0.40	+1.3
106,201	+		Atu6088	0.55	-0.2
106,201	+		Atu6088	0.55	-0.2
106,209	-		Atu6088	0.56	-0.1
106,209	-		Atu6088	0.56	-0.9
106,209	-		Atu6088	0.56	+0.6
106,231	-		Atu6088	0.59	-0.2
106,285	-		Atu6088	0.64	-0.5
106,390	-		Atu6088	0.75	+2.0
106,519	+		Atu6088	0.89	+1.8
106,560	-				-1.1
106,562	-				+0.3
106,562	-				-0.1
106,562	-				-1.1
106,573	-				-1.0
106,605	-				-0.5
106,609	+				+0.2
106,616	-				+0.9
106,617	+				+0.7
106,680	+				+2.5
106,680	+				+0.4
106,688	-				-0.2
106,705	-				+0.2
106,709	+				-0.5
106,709	+				-0.8
106,709	+				+0.2
106,709	+				-0.3
106,717	-				+0.2
106,717	-				-0.2
106,717	-				+0.5
106,753	+				-0.2
106,778	-		Atu6089	0.10	-0.1
106,785	-		Atu6089	0.11	-0.2
106,785	-		Atu6089	0.11	+1.8
106,825	+		Atu6089	0.14	-0.5
106,825	+		Atu6089	0.14	+0.1
106,850	-		Atu6089	0.16	+0.2
106,949	+		Atu6089	0.25	+0.8
106,995	+		Atu6089	0.29	-0.1
107,043	+		Atu6089	0.33	-0.3
107,051	-		Atu6089	0.33	+1.2
107,051	-		Atu6089	0.33	-0.1
107,053	+		Atu6089	0.34	-1.0
107,053	+		Atu6089	0.34	-0.5
107,160	+		Atu6089	0.43	+0.0
107,167	-		Atu6089	0.43	-0.5
107,168	-		Atu6089	0.43	-2.1
107,216	+		Atu6089	0.47	-0.5
107,236	+		Atu6089	0.49	-1.2
107,348	+		Atu6089	0.58	-0.6
107,349	+		Atu6089	0.58	-0.3
107,355	+		Atu6089	0.59	-0.3
107,372	+		Atu6089	0.60	-0.4
107,396	+		Atu6089	0.62	-1.3
107,397	-		Atu6089	0.62	+0.6
107,404	-		Atu6089	0.63	-0.8
107,450	+		Atu6089	0.67	-0.1
107,468	-		Atu6089	0.68	+0.8
107,493	+		Atu6089	0.71	+0.6
107,550	-		Atu6089	0.75	-0.5
107,557	+		Atu6089	0.76	+0.8
107,581	+		Atu6089	0.78	-0.8
107,591	+		Atu6089	0.79	+0.2
107,598	+		Atu6089	0.79	+0.5
107,598	+		Atu6089	0.79	-1.0
107,613	+		Atu6089	0.81	+1.5
107,621	-		Atu6089	0.81	-2.0