Strain Fitness in Agrobacterium fabrum C58 around Atu4708

Experiment: Bethi_Library_OD0.01

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.01
1,868,405	+		Atu4707	0.39	+0.3
1,868,542	+		Atu4707	0.48	+0.3
1,868,633	-		Atu4707	0.54	-0.1
1,868,633	-		Atu4707	0.54	+1.0
1,868,759	-		Atu4707	0.62	-0.6
1,869,136	-		Atu4707	0.86	+0.5
1,869,226	-				-3.0
1,869,283	+				-0.2
1,869,337	+				+0.9
1,869,351	+				+0.5
1,869,359	-				+1.5
1,869,442	-				+0.5
1,869,594	+				+0.2
1,869,602	-				-0.0
1,869,609	+				-0.3
1,869,620	+				+2.0
1,869,674	-		Atu4708	0.11	+0.9
1,869,705	-		Atu4708	0.12	-1.0
1,869,706	+		Atu4708	0.12	+0.3
1,869,744	+		Atu4708	0.13	+0.1
1,869,878	+		Atu4708	0.18	+0.7
1,869,901	+		Atu4708	0.19	+1.9
1,869,937	+		Atu4708	0.20	-0.9
1,870,063	-		Atu4708	0.24	+1.2
1,870,177	+		Atu4708	0.28	+0.5
1,870,185	-		Atu4708	0.29	+0.5
1,870,350	-		Atu4708	0.34	-0.9
1,870,390	+		Atu4708	0.36	-0.2
1,870,398	+		Atu4708	0.36	+0.2
1,870,425	+		Atu4708	0.37	-0.0
1,870,621	-		Atu4708	0.44	-0.2
1,870,676	+		Atu4708	0.46	+1.0
1,870,864	+		Atu4708	0.52	-0.9
1,870,899	+		Atu4708	0.53	-0.2
1,870,902	-		Atu4708	0.53	+1.5
1,870,904	+		Atu4708	0.54	+0.7
1,870,938	-		Atu4708	0.55	+0.0
1,870,982	+		Atu4708	0.56	+0.1
1,870,993	+		Atu4708	0.57	-0.3
1,871,003	+		Atu4708	0.57	+0.8
1,871,003	+		Atu4708	0.57	-0.4
1,871,011	-		Atu4708	0.57	+0.6
1,871,128	+		Atu4708	0.61	-0.5
1,871,128	+		Atu4708	0.61	-0.1
1,871,129	-		Atu4708	0.61	+0.8
1,871,220	+		Atu4708	0.64	+1.5
1,871,295	+		Atu4708	0.67	+2.1
1,871,303	-		Atu4708	0.67	+0.1
1,871,355	+		Atu4708	0.69	+1.0
1,871,382	-		Atu4708	0.70	-0.7
1,871,384	+		Atu4708	0.70	+0.1
1,871,473	+		Atu4708	0.73	-0.1
1,871,481	-		Atu4708	0.74	-0.9
1,871,521	-		Atu4708	0.75	+0.2
1,871,571	+		Atu4708	0.77	+0.4
1,871,573	+		Atu4708	0.77	-0.3
1,871,684	-		Atu4708	0.81	+1.1
1,871,826	+		Atu4708	0.86	+0.6
1,871,935	+		Atu4708	0.89	-0.0
1,871,941	-		Atu4708	0.89	+0.3
1,872,023	+				+0.7
1,872,047	-				+0.4
1,872,050	-				-0.2
1,872,060	+				-0.6
1,872,207	-				+0.2
1,872,233	-				-0.1
1,872,280	-				-0.0
1,872,283	+				-0.2
1,872,296	-				-0.2
1,872,638	-				+0.1
1,872,889	+				+0.1
1,872,923	-				-1.9
1,872,945	+		Atu4710	0.10	-0.5
1,872,980	+		Atu4710	0.12	-0.6
1,872,980	+		Atu4710	0.12	+1.1
1,872,985	+		Atu4710	0.13	-0.8
1,872,993	-		Atu4710	0.13	-0.1
1,873,006	+		Atu4710	0.14	+0.8
1,873,018	+		Atu4710	0.15	+0.2
1,873,018	-		Atu4710	0.15	-0.6
1,873,020	+		Atu4710	0.15	+0.5
1,873,026	-		Atu4710	0.15	-0.3
1,873,027	-		Atu4710	0.15	+0.0
1,873,092	+		Atu4710	0.19	-0.1
1,873,100	-		Atu4710	0.19	-0.5
1,873,115	+		Atu4710	0.20	-2.7
1,873,123	-		Atu4710	0.21	-0.9
1,873,198	+		Atu4710	0.25	-0.0
1,873,206	-		Atu4710	0.26	+0.1
1,873,217	+		Atu4710	0.27	+1.1
1,873,225	-		Atu4710	0.27	+0.8