Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3876 and Atu3877 are separated by 122 nucleotides Atu3877 and Atu3878 overlap by 4 nucleotides
Atu3876: Atu3876 - glycerol-3-phosphate dehydrogenase, at 970,174 to 971,898
Atu3876
Atu3877: Atu3877 - aldo/keto reductase, at 972,021 to 973,019
Atu3877
Atu3878: Atu3878 - transcriptional regulator, at 973,016 to 973,951
Atu3878
Position (kb) 972
973
974 Strain fitness (log2 ratio) -2
-1
0
1
2 at 971.046 kb on + strand, within Atu3876 at 971.048 kb on + strand, within Atu3876 at 971.048 kb on + strand, within Atu3876 at 971.074 kb on + strand, within Atu3876 at 971.079 kb on + strand, within Atu3876 at 971.082 kb on - strand, within Atu3876 at 971.082 kb on - strand, within Atu3876 at 971.196 kb on + strand, within Atu3876 at 971.265 kb on + strand, within Atu3876 at 971.292 kb on - strand, within Atu3876 at 971.407 kb on - strand, within Atu3876 at 971.481 kb on - strand, within Atu3876 at 971.487 kb on + strand, within Atu3876 at 971.489 kb on - strand, within Atu3876 at 971.695 kb on + strand, within Atu3876 at 971.727 kb on + strand at 971.772 kb on + strand at 971.900 kb on + strand at 971.973 kb on - strand at 972.053 kb on + strand at 972.066 kb on - strand at 972.079 kb on - strand at 972.125 kb on + strand, within Atu3877 at 972.185 kb on - strand, within Atu3877 at 972.187 kb on + strand, within Atu3877 at 972.195 kb on - strand, within Atu3877 at 972.241 kb on + strand, within Atu3877 at 972.241 kb on + strand, within Atu3877 at 972.249 kb on - strand, within Atu3877 at 972.316 kb on - strand, within Atu3877 at 972.334 kb on + strand, within Atu3877 at 972.344 kb on + strand, within Atu3877 at 972.414 kb on + strand, within Atu3877 at 972.544 kb on + strand, within Atu3877 at 972.552 kb on - strand, within Atu3877 at 972.552 kb on - strand, within Atu3877 at 972.613 kb on - strand, within Atu3877 at 972.615 kb on - strand, within Atu3877 at 972.639 kb on - strand, within Atu3877 at 972.642 kb on + strand, within Atu3877 at 972.659 kb on - strand, within Atu3877 at 972.677 kb on - strand, within Atu3877 at 972.742 kb on + strand, within Atu3877 at 972.783 kb on - strand, within Atu3877 at 972.825 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.946 kb on + strand at 972.946 kb on - strand at 972.953 kb on + strand at 972.954 kb on + strand at 973.072 kb on + strand at 973.146 kb on + strand, within Atu3878 at 973.146 kb on + strand, within Atu3878 at 973.180 kb on + strand, within Atu3878 at 973.180 kb on + strand, within Atu3878 at 973.202 kb on + strand, within Atu3878 at 973.246 kb on - strand, within Atu3878 at 973.246 kb on - strand, within Atu3878 at 973.339 kb on + strand, within Atu3878 at 973.386 kb on + strand, within Atu3878 at 973.388 kb on + strand, within Atu3878 at 973.389 kb on - strand, within Atu3878 at 973.396 kb on - strand, within Atu3878 at 973.421 kb on - strand, within Atu3878 at 973.435 kb on + strand, within Atu3878 at 973.443 kb on - strand, within Atu3878 at 973.445 kb on - strand, within Atu3878 at 973.445 kb on - strand, within Atu3878 at 973.449 kb on + strand, within Atu3878 at 973.479 kb on - strand, within Atu3878 at 973.484 kb on - strand, within Atu3878 at 973.527 kb on + strand, within Atu3878 at 973.527 kb on + strand, within Atu3878 at 973.535 kb on - strand, within Atu3878 at 973.535 kb on - strand, within Atu3878 at 973.538 kb on + strand, within Atu3878 at 973.721 kb on + strand, within Atu3878 at 973.729 kb on + strand, within Atu3878 at 973.737 kb on - strand, within Atu3878 at 973.801 kb on + strand, within Atu3878 at 973.944 kb on + strand at 973.952 kb on - strand at 974.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 971,046 + Atu3876 0.51 -1.1 971,048 + Atu3876 0.51 +0.1 971,048 + Atu3876 0.51 -2.0 971,074 + Atu3876 0.52 -1.7 971,079 + Atu3876 0.52 -0.4 971,082 - Atu3876 0.53 +0.5 971,082 - Atu3876 0.53 -0.6 971,196 + Atu3876 0.59 +0.2 971,265 + Atu3876 0.63 -0.8 971,292 - Atu3876 0.65 -0.8 971,407 - Atu3876 0.71 +1.4 971,481 - Atu3876 0.76 -0.1 971,487 + Atu3876 0.76 -0.1 971,489 - Atu3876 0.76 +1.6 971,695 + Atu3876 0.88 -0.3 971,727 + +0.4 971,772 + -0.5 971,900 + +0.1 971,973 - +0.0 972,053 + +0.1 972,066 - -1.0 972,079 - -0.5 972,125 + Atu3877 0.10 +0.7 972,185 - Atu3877 0.16 +0.0 972,187 + Atu3877 0.17 +0.7 972,195 - Atu3877 0.17 -0.0 972,241 + Atu3877 0.22 -0.1 972,241 + Atu3877 0.22 +1.1 972,249 - Atu3877 0.23 +0.7 972,316 - Atu3877 0.30 -0.0 972,334 + Atu3877 0.31 -0.6 972,344 + Atu3877 0.32 +0.1 972,414 + Atu3877 0.39 -1.4 972,544 + Atu3877 0.52 +2.4 972,552 - Atu3877 0.53 -0.6 972,552 - Atu3877 0.53 -0.1 972,613 - Atu3877 0.59 +1.4 972,615 - Atu3877 0.59 +0.3 972,639 - Atu3877 0.62 -0.1 972,642 + Atu3877 0.62 +0.0 972,659 - Atu3877 0.64 +0.7 972,677 - Atu3877 0.66 -0.4 972,742 + Atu3877 0.72 +0.3 972,783 - Atu3877 0.76 -1.3 972,825 + Atu3877 0.80 +0.3 972,837 + Atu3877 0.82 +0.6 972,837 + Atu3877 0.82 +0.3 972,837 + Atu3877 0.82 +0.1 972,946 + +2.6 972,946 - +0.0 972,953 + +0.3 972,954 + +0.2 973,072 + +2.6 973,146 + Atu3878 0.14 -1.0 973,146 + Atu3878 0.14 -0.4 973,180 + Atu3878 0.18 -1.2 973,180 + Atu3878 0.18 +1.1 973,202 + Atu3878 0.20 +1.6 973,246 - Atu3878 0.25 +1.6 973,246 - Atu3878 0.25 -0.1 973,339 + Atu3878 0.35 -0.5 973,386 + Atu3878 0.40 -0.3 973,388 + Atu3878 0.40 +0.6 973,389 - Atu3878 0.40 -0.1 973,396 - Atu3878 0.41 +0.6 973,421 - Atu3878 0.43 -0.2 973,435 + Atu3878 0.45 -1.0 973,443 - Atu3878 0.46 +0.6 973,445 - Atu3878 0.46 +0.4 973,445 - Atu3878 0.46 -0.5 973,449 + Atu3878 0.46 -0.2 973,479 - Atu3878 0.49 -0.2 973,484 - Atu3878 0.50 -0.0 973,527 + Atu3878 0.55 -0.8 973,527 + Atu3878 0.55 +0.6 973,535 - Atu3878 0.55 -0.6 973,535 - Atu3878 0.55 -0.7 973,538 + Atu3878 0.56 +0.8 973,721 + Atu3878 0.75 -1.5 973,729 + Atu3878 0.76 -0.3 973,737 - Atu3878 0.77 -0.4 973,801 + Atu3878 0.84 -0.7 973,944 + +0.8 973,952 - +0.1 974,009 + -1.2
Or see this region's nucleotide sequence