Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3392 and Atu3393 are separated by 176 nucleotides Atu3393 and Atu3394 overlap by 4 nucleotides Atu3394 and Atu3395 overlap by 4 nucleotides
Atu3392: Atu3392 - methyltransferase, at 436,675 to 437,499
Atu3392
Atu3393: Atu3393 - pseudoazurin, at 437,676 to 438,116
Atu3393
Atu3394: Atu3394 - iron ABC transporter ATPase, at 438,113 to 438,913
Atu3394
Atu3395: Atu3395 - iron (III ABC transporter permease ABC transporter permease, at 438,910 to 439,863
Atu3395
Position (kb) 437
438
439 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 436.722 kb on + strand at 436.814 kb on + strand, within Atu3392 at 436.924 kb on + strand, within Atu3392 at 436.924 kb on + strand, within Atu3392 at 436.932 kb on - strand, within Atu3392 at 436.932 kb on - strand, within Atu3392 at 436.942 kb on - strand, within Atu3392 at 436.946 kb on + strand, within Atu3392 at 437.075 kb on - strand, within Atu3392 at 437.229 kb on - strand, within Atu3392 at 437.451 kb on + strand at 437.451 kb on + strand at 437.488 kb on + strand at 437.496 kb on - strand at 437.543 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.551 kb on - strand at 437.607 kb on - strand at 437.609 kb on + strand at 437.612 kb on - strand at 437.617 kb on - strand at 437.617 kb on - strand at 437.732 kb on - strand, within Atu3393 at 437.781 kb on - strand, within Atu3393 at 437.793 kb on + strand, within Atu3393 at 437.808 kb on - strand, within Atu3393 at 438.070 kb on + strand, within Atu3393 at 438.088 kb on - strand at 438.107 kb on - strand at 438.292 kb on + strand, within Atu3394 at 438.784 kb on - strand, within Atu3394 at 438.801 kb on - strand, within Atu3394 at 438.988 kb on - strand at 439.080 kb on - strand, within Atu3395 at 439.083 kb on + strand, within Atu3395 at 439.089 kb on + strand, within Atu3395
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 436,722 + -0.1 436,814 + Atu3392 0.17 -0.1 436,924 + Atu3392 0.30 -0.6 436,924 + Atu3392 0.30 +1.4 436,932 - Atu3392 0.31 +0.7 436,932 - Atu3392 0.31 -1.4 436,942 - Atu3392 0.32 -1.4 436,946 + Atu3392 0.33 +1.1 437,075 - Atu3392 0.48 -0.2 437,229 - Atu3392 0.67 +0.4 437,451 + +0.3 437,451 + -0.7 437,488 + -1.9 437,496 - +1.2 437,543 + +0.0 437,548 + +0.3 437,548 + +0.4 437,548 + +1.4 437,551 - +0.4 437,607 - +0.4 437,609 + +0.1 437,612 - -0.0 437,617 - -0.5 437,617 - +0.2 437,732 - Atu3393 0.13 +0.1 437,781 - Atu3393 0.24 +1.0 437,793 + Atu3393 0.27 +1.3 437,808 - Atu3393 0.30 +2.8 438,070 + Atu3393 0.89 -0.5 438,088 - -0.2 438,107 - +0.3 438,292 + Atu3394 0.22 +0.9 438,784 - Atu3394 0.84 -0.6 438,801 - Atu3394 0.86 -0.1 438,988 - +0.8 439,080 - Atu3395 0.18 -0.2 439,083 + Atu3395 0.18 +1.0 439,089 + Atu3395 0.19 -1.8
Or see this region's nucleotide sequence