Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3358 and Atu3359 overlap by 4 nucleotides Atu3359 and Atu3360 are separated by 12 nucleotides Atu3360 and Atu3361 are separated by 4 nucleotides
Atu3358: Atu3358 - amino acid ABC transporter permease, at 396,414 to 397,046
Atu3358
Atu3359: Atu3359 - amino acid ABC transporter permease, at 397,043 to 397,825
Atu3359
Atu3360: Atu3360 - amino acid ABC transporter ATPase/permease, at 397,838 to 398,653
Atu3360
Atu3361: Atu3361 - hypothetical protein, at 398,658 to 400,004
Atu3361
Position (kb) 397
398
399 Strain fitness (log2 ratio) -2
-1
0
1
2 at 396.906 kb on + strand, within Atu3358 at 396.911 kb on + strand, within Atu3358 at 396.919 kb on - strand, within Atu3358 at 396.921 kb on - strand, within Atu3358 at 396.933 kb on + strand, within Atu3358 at 397.000 kb on + strand at 397.034 kb on - strand at 397.097 kb on + strand at 397.105 kb on + strand at 397.128 kb on + strand, within Atu3359 at 397.166 kb on - strand, within Atu3359 at 397.327 kb on - strand, within Atu3359 at 397.338 kb on + strand, within Atu3359 at 397.367 kb on + strand, within Atu3359 at 397.375 kb on - strand, within Atu3359 at 397.405 kb on + strand, within Atu3359 at 397.426 kb on + strand, within Atu3359 at 397.434 kb on - strand, within Atu3359 at 397.434 kb on - strand, within Atu3359 at 397.519 kb on - strand, within Atu3359 at 397.540 kb on - strand, within Atu3359 at 397.541 kb on - strand, within Atu3359 at 397.566 kb on + strand, within Atu3359 at 397.572 kb on + strand, within Atu3359 at 397.579 kb on - strand, within Atu3359 at 397.580 kb on - strand, within Atu3359 at 397.754 kb on + strand at 397.824 kb on + strand at 397.832 kb on - strand at 397.848 kb on - strand at 397.848 kb on - strand at 397.848 kb on - strand at 397.861 kb on - strand at 397.900 kb on + strand at 397.933 kb on + strand, within Atu3360 at 397.944 kb on - strand, within Atu3360 at 398.015 kb on + strand, within Atu3360 at 398.023 kb on - strand, within Atu3360 at 398.067 kb on - strand, within Atu3360 at 398.079 kb on + strand, within Atu3360 at 398.087 kb on - strand, within Atu3360 at 398.270 kb on - strand, within Atu3360 at 398.330 kb on + strand, within Atu3360 at 398.338 kb on - strand, within Atu3360 at 398.369 kb on - strand, within Atu3360 at 398.515 kb on - strand, within Atu3360 at 398.540 kb on + strand, within Atu3360 at 398.553 kb on - strand, within Atu3360 at 398.948 kb on - strand, within Atu3361 at 398.948 kb on - strand, within Atu3361 at 398.948 kb on - strand, within Atu3361 at 398.948 kb on - strand, within Atu3361 at 398.960 kb on + strand, within Atu3361 at 398.987 kb on + strand, within Atu3361 at 399.005 kb on - strand, within Atu3361 at 399.029 kb on - strand, within Atu3361 at 399.096 kb on - strand, within Atu3361 at 399.155 kb on - strand, within Atu3361 at 399.167 kb on + strand, within Atu3361 at 399.268 kb on + strand, within Atu3361 at 399.268 kb on + strand, within Atu3361 at 399.281 kb on - strand, within Atu3361 at 399.395 kb on + strand, within Atu3361 at 399.426 kb on + strand, within Atu3361 at 399.496 kb on - strand, within Atu3361 at 399.596 kb on - strand, within Atu3361
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 396,906 + Atu3358 0.78 -0.5 396,911 + Atu3358 0.79 +0.4 396,919 - Atu3358 0.80 -0.2 396,921 - Atu3358 0.80 +0.4 396,933 + Atu3358 0.82 -1.1 397,000 + +0.0 397,034 - +0.4 397,097 + +0.9 397,105 + +0.3 397,128 + Atu3359 0.11 +0.4 397,166 - Atu3359 0.16 -0.2 397,327 - Atu3359 0.36 -0.3 397,338 + Atu3359 0.38 -0.1 397,367 + Atu3359 0.41 -0.4 397,375 - Atu3359 0.42 -0.5 397,405 + Atu3359 0.46 +0.5 397,426 + Atu3359 0.49 +0.0 397,434 - Atu3359 0.50 -0.1 397,434 - Atu3359 0.50 +1.2 397,519 - Atu3359 0.61 -0.1 397,540 - Atu3359 0.63 +1.0 397,541 - Atu3359 0.64 +1.1 397,566 + Atu3359 0.67 -1.2 397,572 + Atu3359 0.68 -0.8 397,579 - Atu3359 0.68 -0.5 397,580 - Atu3359 0.69 -0.2 397,754 + +1.1 397,824 + +0.1 397,832 - -0.6 397,848 - -0.3 397,848 - +0.0 397,848 - -2.4 397,861 - +0.1 397,900 + +0.4 397,933 + Atu3360 0.12 +0.4 397,944 - Atu3360 0.13 -0.9 398,015 + Atu3360 0.22 -0.8 398,023 - Atu3360 0.23 -0.6 398,067 - Atu3360 0.28 -0.1 398,079 + Atu3360 0.30 -0.6 398,087 - Atu3360 0.31 -0.7 398,270 - Atu3360 0.53 -0.9 398,330 + Atu3360 0.60 +0.2 398,338 - Atu3360 0.61 -0.6 398,369 - Atu3360 0.65 -0.8 398,515 - Atu3360 0.83 +0.4 398,540 + Atu3360 0.86 -0.6 398,553 - Atu3360 0.88 -0.6 398,948 - Atu3361 0.22 +0.7 398,948 - Atu3361 0.22 -0.5 398,948 - Atu3361 0.22 +0.2 398,948 - Atu3361 0.22 -0.7 398,960 + Atu3361 0.22 +0.2 398,987 + Atu3361 0.24 -0.1 399,005 - Atu3361 0.26 -0.1 399,029 - Atu3361 0.28 -1.1 399,096 - Atu3361 0.33 -0.1 399,155 - Atu3361 0.37 -0.3 399,167 + Atu3361 0.38 -0.4 399,268 + Atu3361 0.45 +1.1 399,268 + Atu3361 0.45 -0.1 399,281 - Atu3361 0.46 -0.1 399,395 + Atu3361 0.55 +0.4 399,426 + Atu3361 0.57 +1.4 399,496 - Atu3361 0.62 +1.9 399,596 - Atu3361 0.70 +0.2
Or see this region's nucleotide sequence