Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3314 and Atu3315 overlap by 4 nucleotides Atu3315 and Atu3316 are separated by 1 nucleotides Atu3316 and Atu3317 are separated by 394 nucleotides Atu3317 and Atu3318 are separated by 59 nucleotides
Atu3314: Atu3314 - cellulose synthase, at 344,599 to 346,536
Atu3314
Atu3315: Atu3315 - UDP-glucose 4-epimerase, at 346,533 to 347,516
Atu3315
Atu3316: Atu3316 - dTDP-glucose 4-6-dehydratase, at 347,518 to 348,540
Atu3316
Atu3317: Atu3317 - hypothetical protein, at 348,935 to 349,285
Atu3317
Atu3318: Atu3318 - LuxR family transcriptional regulator, at 349,345 to 350,115
Atu3318
Position (kb) 347
348
349 Strain fitness (log2 ratio) -1
0
1 at 346.539 kb on - strand at 346.625 kb on - strand at 346.625 kb on - strand at 346.630 kb on + strand at 346.632 kb on + strand, within Atu3315 at 346.829 kb on + strand, within Atu3315 at 346.950 kb on + strand, within Atu3315 at 347.055 kb on - strand, within Atu3315 at 347.098 kb on - strand, within Atu3315 at 347.195 kb on + strand, within Atu3315 at 347.286 kb on - strand, within Atu3315 at 347.308 kb on - strand, within Atu3315 at 347.466 kb on - strand at 347.519 kb on + strand at 347.665 kb on + strand, within Atu3316 at 347.783 kb on - strand, within Atu3316 at 347.795 kb on - strand, within Atu3316 at 347.949 kb on + strand, within Atu3316 at 347.949 kb on + strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 348.001 kb on - strand, within Atu3316 at 348.144 kb on + strand, within Atu3316 at 348.152 kb on - strand, within Atu3316 at 348.213 kb on - strand, within Atu3316 at 348.238 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.499 kb on - strand at 348.550 kb on - strand at 348.869 kb on + strand at 348.877 kb on - strand at 348.891 kb on - strand at 348.921 kb on - strand at 349.034 kb on + strand, within Atu3317 at 349.074 kb on - strand, within Atu3317 at 349.134 kb on - strand, within Atu3317 at 349.134 kb on - strand, within Atu3317 at 349.207 kb on + strand, within Atu3317 at 349.234 kb on - strand, within Atu3317 at 349.234 kb on - strand, within Atu3317 at 349.457 kb on - strand, within Atu3318 at 349.462 kb on - strand, within Atu3318 at 349.496 kb on + strand, within Atu3318 at 349.531 kb on + strand, within Atu3318 at 349.539 kb on - strand, within Atu3318
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 346,539 - -0.4 346,625 - -0.3 346,625 - +1.0 346,630 + -0.1 346,632 + Atu3315 0.10 -0.0 346,829 + Atu3315 0.30 +0.4 346,950 + Atu3315 0.42 +1.2 347,055 - Atu3315 0.53 +1.1 347,098 - Atu3315 0.57 +0.6 347,195 + Atu3315 0.67 +0.4 347,286 - Atu3315 0.77 +0.1 347,308 - Atu3315 0.79 +0.1 347,466 - -0.8 347,519 + +1.2 347,665 + Atu3316 0.14 +0.2 347,783 - Atu3316 0.26 -0.3 347,795 - Atu3316 0.27 -0.5 347,949 + Atu3316 0.42 -0.4 347,949 + Atu3316 0.42 -1.5 347,957 - Atu3316 0.43 +0.5 347,957 - Atu3316 0.43 +0.9 348,001 - Atu3316 0.47 -0.8 348,144 + Atu3316 0.61 -0.3 348,152 - Atu3316 0.62 -0.5 348,213 - Atu3316 0.68 +0.0 348,238 + Atu3316 0.70 -0.1 348,289 + Atu3316 0.75 -0.5 348,289 + Atu3316 0.75 -1.6 348,499 - +0.4 348,550 - -0.2 348,869 + +0.2 348,877 - +0.3 348,891 - -0.7 348,921 - +0.9 349,034 + Atu3317 0.28 +1.4 349,074 - Atu3317 0.40 -0.2 349,134 - Atu3317 0.57 -0.8 349,134 - Atu3317 0.57 +0.0 349,207 + Atu3317 0.77 -0.4 349,234 - Atu3317 0.85 +0.7 349,234 - Atu3317 0.85 +0.1 349,457 - Atu3318 0.15 +0.8 349,462 - Atu3318 0.15 +1.0 349,496 + Atu3318 0.20 -0.0 349,531 + Atu3318 0.24 +0.4 349,539 - Atu3318 0.25 +0.0
Or see this region's nucleotide sequence