Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1384 and Atu1385 are separated by 81 nucleotides Atu1385 and Atu1386 overlap by 4 nucleotides Atu1386 and Atu1387 are separated by 192 nucleotides Atu1387 and Atu1388 are separated by 6 nucleotides
Atu1384: Atu1384 - acyl-(acyl carrier protein)--UDP-N-acetylglucosamine O-acyltransferase, at 1,378,412 to 1,379,227
Atu1384
Atu1385: Atu1385 - hypothetical protein, at 1,379,309 to 1,380,112
Atu1385
Atu1386: Atu1386 - lipid A-disaccharide synthase, at 1,380,109 to 1,381,293
Atu1386
Atu1387: Atu1387 - transcriptional regulator, GntR family, at 1,381,486 to 1,382,196
Atu1387
Atu1388: Atu1388 - ABC transporter, substrate binding protein (amino acid), at 1,382,203 to 1,382,988
Atu1388
Position (kb) 1380
1381
1382 Strain fitness (log2 ratio) -1
0
1 at 1380.070 kb on + strand at 1380.108 kb on + strand at 1381.300 kb on - strand at 1381.357 kb on - strand at 1381.372 kb on - strand at 1381.372 kb on - strand at 1381.431 kb on - strand at 1381.739 kb on - strand, within Atu1387 at 1381.861 kb on - strand, within Atu1387 at 1382.038 kb on - strand, within Atu1387 at 1382.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 1,380,070 + +0.1 1,380,108 + +0.9 1,381,300 - +0.5 1,381,357 - -0.6 1,381,372 - -0.3 1,381,372 - +0.1 1,381,431 - +0.9 1,381,739 - Atu1387 0.36 -1.4 1,381,861 - Atu1387 0.53 -0.9 1,382,038 - Atu1387 0.78 +0.2 1,382,257 - +1.5
Or see this region's nucleotide sequence