Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0763 and Atu0764 are separated by 6 nucleotides Atu0764 and Atu0765 are separated by 192 nucleotides Atu0765 and Atu0766 are separated by 81 nucleotides
Atu0763: Atu0763 - hydrolase, at 758,871 to 759,545
Atu0763
Atu0764: Atu0764 - hypothetical protein, at 759,552 to 759,989
Atu0764
Atu0765: Atu0765 - TldD, at 760,182 to 761,597
Atu0765
Atu0766: Atu0766 - invasion associated locus B, at 761,679 to 762,203
Atu0766
Position (kb) 760
761
762 Strain fitness (log2 ratio) -2
-1
0
1
2 at 759.188 kb on + strand, within Atu0763 at 759.240 kb on + strand, within Atu0763 at 759.248 kb on + strand, within Atu0763 at 759.248 kb on - strand, within Atu0763 at 759.249 kb on + strand, within Atu0763 at 759.278 kb on + strand, within Atu0763 at 759.281 kb on - strand, within Atu0763 at 759.582 kb on + strand at 759.605 kb on - strand, within Atu0764 at 759.681 kb on + strand, within Atu0764 at 759.807 kb on + strand, within Atu0764 at 759.817 kb on + strand, within Atu0764 at 759.825 kb on - strand, within Atu0764 at 759.832 kb on + strand, within Atu0764 at 759.840 kb on - strand, within Atu0764 at 759.938 kb on - strand, within Atu0764 at 759.998 kb on - strand at 760.003 kb on - strand at 760.063 kb on + strand at 760.098 kb on + strand at 760.101 kb on - strand at 760.105 kb on + strand at 760.132 kb on - strand at 760.174 kb on + strand at 760.180 kb on + strand at 760.182 kb on - strand at 760.182 kb on - strand at 760.214 kb on - strand at 760.218 kb on + strand at 760.226 kb on - strand at 760.396 kb on + strand, within Atu0765 at 760.404 kb on - strand, within Atu0765 at 760.416 kb on - strand, within Atu0765 at 760.564 kb on + strand, within Atu0765 at 760.639 kb on - strand, within Atu0765 at 760.682 kb on - strand, within Atu0765 at 760.709 kb on - strand, within Atu0765 at 760.926 kb on - strand, within Atu0765 at 761.194 kb on - strand, within Atu0765 at 761.210 kb on + strand, within Atu0765 at 761.414 kb on + strand, within Atu0765 at 761.422 kb on - strand, within Atu0765 at 761.439 kb on - strand, within Atu0765 at 761.576 kb on - strand at 761.648 kb on - strand at 761.651 kb on + strand at 761.659 kb on - strand at 762.368 kb on + strand at 762.399 kb on - strand at 762.425 kb on + strand at 762.425 kb on + strand at 762.434 kb on - strand at 762.449 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 759,188 + Atu0763 0.47 -0.0 759,240 + Atu0763 0.55 -0.1 759,248 + Atu0763 0.56 -0.1 759,248 - Atu0763 0.56 -0.0 759,249 + Atu0763 0.56 +0.3 759,278 + Atu0763 0.60 +0.5 759,281 - Atu0763 0.61 -0.9 759,582 + +0.4 759,605 - Atu0764 0.12 -1.3 759,681 + Atu0764 0.29 +0.7 759,807 + Atu0764 0.58 -0.4 759,817 + Atu0764 0.61 -1.8 759,825 - Atu0764 0.62 +0.3 759,832 + Atu0764 0.64 -0.6 759,840 - Atu0764 0.66 +1.9 759,938 - Atu0764 0.88 +0.6 759,998 - -0.5 760,003 - -0.4 760,063 + +0.1 760,098 + +0.3 760,101 - -0.5 760,105 + +0.1 760,132 - -1.5 760,174 + -0.6 760,180 + -0.0 760,182 - +0.1 760,182 - -0.5 760,214 - -0.5 760,218 + +0.6 760,226 - -0.2 760,396 + Atu0765 0.15 +1.3 760,404 - Atu0765 0.16 +0.2 760,416 - Atu0765 0.17 +0.7 760,564 + Atu0765 0.27 +0.3 760,639 - Atu0765 0.32 +0.0 760,682 - Atu0765 0.35 +0.5 760,709 - Atu0765 0.37 +0.9 760,926 - Atu0765 0.53 +1.5 761,194 - Atu0765 0.71 +0.8 761,210 + Atu0765 0.73 +0.0 761,414 + Atu0765 0.87 +0.8 761,422 - Atu0765 0.88 -1.5 761,439 - Atu0765 0.89 +0.1 761,576 - +0.7 761,648 - -1.0 761,651 + +2.7 761,659 - -0.3 762,368 + +1.0 762,399 - -0.3 762,425 + -0.1 762,425 + +0.6 762,434 - +0.3 762,449 + +0.0
Or see this region's nucleotide sequence