Experiment: Bethi_Library_OD0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0627 and Atu0628 are separated by 118 nucleotides Atu0628 and Atu0629 overlap by 14 nucleotides Atu0629 and Atu0630 are separated by 198 nucleotides
Atu0627: Atu0627 - carboxymethylenebutenolidase, at 615,684 to 616,559
Atu0627
Atu0628: Atu0628 - two component sensor kinase, at 616,678 to 618,033
Atu0628
Atu0629: Atu0629 - two component response regulator, at 618,020 to 618,697
Atu0629
Atu0630: Atu0630 - hypothetical protein, at 618,896 to 619,165
Atu0630
Position (kb) 616
617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 615.692 kb on + strand at 615.896 kb on - strand, within Atu0627 at 616.103 kb on - strand, within Atu0627 at 616.180 kb on + strand, within Atu0627 at 616.249 kb on - strand, within Atu0627 at 616.249 kb on - strand, within Atu0627 at 616.373 kb on + strand, within Atu0627 at 616.607 kb on + strand at 616.629 kb on + strand at 616.637 kb on - strand at 616.654 kb on + strand at 616.751 kb on + strand at 616.776 kb on - strand at 616.787 kb on - strand at 616.787 kb on - strand at 616.787 kb on - strand at 616.863 kb on - strand, within Atu0628 at 616.964 kb on + strand, within Atu0628 at 616.964 kb on + strand, within Atu0628 at 616.964 kb on + strand, within Atu0628 at 616.972 kb on - strand, within Atu0628 at 616.972 kb on - strand, within Atu0628 at 617.052 kb on + strand, within Atu0628 at 617.052 kb on + strand, within Atu0628 at 617.087 kb on - strand, within Atu0628 at 617.087 kb on - strand, within Atu0628 at 617.141 kb on + strand, within Atu0628 at 617.141 kb on + strand, within Atu0628 at 617.141 kb on + strand, within Atu0628 at 617.149 kb on - strand, within Atu0628 at 617.303 kb on + strand, within Atu0628 at 617.311 kb on - strand, within Atu0628 at 617.327 kb on + strand, within Atu0628 at 617.373 kb on + strand, within Atu0628 at 617.500 kb on - strand, within Atu0628 at 617.594 kb on - strand, within Atu0628 at 617.600 kb on - strand, within Atu0628 at 617.773 kb on + strand, within Atu0628 at 617.881 kb on + strand, within Atu0628 at 617.917 kb on + strand at 617.925 kb on - strand at 617.963 kb on + strand at 617.986 kb on - strand at 618.062 kb on + strand at 618.114 kb on - strand, within Atu0629 at 618.209 kb on + strand, within Atu0629 at 618.237 kb on + strand, within Atu0629 at 618.271 kb on + strand, within Atu0629 at 618.324 kb on - strand, within Atu0629 at 618.393 kb on + strand, within Atu0629 at 618.440 kb on + strand, within Atu0629 at 618.440 kb on + strand, within Atu0629 at 618.440 kb on + strand, within Atu0629 at 618.442 kb on + strand, within Atu0629 at 618.448 kb on - strand, within Atu0629 at 618.448 kb on - strand, within Atu0629 at 618.460 kb on - strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.522 kb on - strand, within Atu0629 at 618.545 kb on + strand, within Atu0629 at 618.560 kb on + strand, within Atu0629 at 618.568 kb on - strand, within Atu0629 at 618.600 kb on - strand, within Atu0629 at 618.600 kb on - strand, within Atu0629 at 618.604 kb on + strand, within Atu0629 at 618.742 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.01 remove 615,692 + +0.3 615,896 - Atu0627 0.24 -0.9 616,103 - Atu0627 0.48 +0.2 616,180 + Atu0627 0.57 -0.1 616,249 - Atu0627 0.64 +0.0 616,249 - Atu0627 0.64 +0.7 616,373 + Atu0627 0.79 +1.5 616,607 + +0.3 616,629 + +0.4 616,637 - +0.5 616,654 + +0.1 616,751 + +0.4 616,776 - -0.9 616,787 - +0.5 616,787 - +0.3 616,787 - +0.5 616,863 - Atu0628 0.14 +1.7 616,964 + Atu0628 0.21 -0.4 616,964 + Atu0628 0.21 +0.4 616,964 + Atu0628 0.21 +0.3 616,972 - Atu0628 0.22 +0.6 616,972 - Atu0628 0.22 +1.5 617,052 + Atu0628 0.28 +0.1 617,052 + Atu0628 0.28 -0.1 617,087 - Atu0628 0.30 +1.5 617,087 - Atu0628 0.30 +0.1 617,141 + Atu0628 0.34 +1.1 617,141 + Atu0628 0.34 -0.1 617,141 + Atu0628 0.34 +2.5 617,149 - Atu0628 0.35 +0.2 617,303 + Atu0628 0.46 +0.0 617,311 - Atu0628 0.47 +0.3 617,327 + Atu0628 0.48 -0.1 617,373 + Atu0628 0.51 +0.5 617,500 - Atu0628 0.61 +3.1 617,594 - Atu0628 0.68 +0.0 617,600 - Atu0628 0.68 +0.5 617,773 + Atu0628 0.81 -0.4 617,881 + Atu0628 0.89 +0.2 617,917 + +0.1 617,925 - -0.1 617,963 + +0.9 617,986 - -0.4 618,062 + +0.0 618,114 - Atu0629 0.14 -0.0 618,209 + Atu0629 0.28 -0.2 618,237 + Atu0629 0.32 -0.4 618,271 + Atu0629 0.37 +0.2 618,324 - Atu0629 0.45 -0.0 618,393 + Atu0629 0.55 -0.4 618,440 + Atu0629 0.62 -0.1 618,440 + Atu0629 0.62 -0.7 618,440 + Atu0629 0.62 -2.5 618,442 + Atu0629 0.62 +1.5 618,448 - Atu0629 0.63 -0.7 618,448 - Atu0629 0.63 -0.4 618,460 - Atu0629 0.65 +0.2 618,514 + Atu0629 0.73 +0.5 618,514 + Atu0629 0.73 +0.5 618,514 + Atu0629 0.73 -1.5 618,514 + Atu0629 0.73 +0.1 618,514 + Atu0629 0.73 +0.9 618,522 - Atu0629 0.74 +0.2 618,545 + Atu0629 0.77 -0.0 618,560 + Atu0629 0.80 +0.2 618,568 - Atu0629 0.81 +0.5 618,600 - Atu0629 0.86 -0.3 618,600 - Atu0629 0.86 -0.1 618,604 + Atu0629 0.86 +1.5 618,742 + +0.5
Or see this region's nucleotide sequence