Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5161 and Atu5162 are separated by 2 nucleotides Atu5162 and Atu5163 overlap by 4 nucleotides Atu5163 and Atu5164 are separated by 2 nucleotides Atu5164 and Atu5165 are separated by 100 nucleotides
Atu5161: Atu5161 - hypothetical protein, at 159,966 to 160,505
Atu5161
Atu5162: Atu5162 - type IV secretion protein AvhB1, at 160,508 to 161,194
Atu5162
Atu5163: Atu5163 - type IV secretion protein AvhB2, at 161,191 to 161,490
Atu5163
Atu5164: Atu5164 - type IV secretion protein AvhB3, at 161,493 to 161,834
Atu5164
Atu5165: Atu5165 - type IV secretion protein AvhB4, at 161,935 to 164,208
Atu5165
Position (kb) 161
162 Strain fitness (log2 ratio) -1
0
1
2 at 160.206 kb on - strand, within Atu5161 at 160.342 kb on + strand, within Atu5161 at 160.387 kb on + strand, within Atu5161 at 160.395 kb on - strand, within Atu5161 at 160.420 kb on - strand, within Atu5161 at 160.420 kb on - strand, within Atu5161 at 160.431 kb on + strand, within Atu5161 at 160.449 kb on + strand, within Atu5161 at 160.492 kb on + strand at 160.492 kb on + strand at 160.507 kb on - strand at 160.511 kb on + strand at 160.547 kb on - strand at 160.621 kb on + strand, within Atu5162 at 160.656 kb on + strand, within Atu5162 at 160.656 kb on + strand, within Atu5162 at 160.664 kb on - strand, within Atu5162 at 160.664 kb on - strand, within Atu5162 at 160.747 kb on - strand, within Atu5162 at 160.749 kb on + strand, within Atu5162 at 160.790 kb on + strand, within Atu5162 at 160.849 kb on + strand, within Atu5162 at 160.968 kb on - strand, within Atu5162 at 161.128 kb on - strand at 161.129 kb on + strand at 161.208 kb on + strand at 161.399 kb on + strand, within Atu5163 at 161.404 kb on + strand, within Atu5163 at 161.404 kb on + strand, within Atu5163 at 161.412 kb on - strand, within Atu5163 at 161.484 kb on + strand at 161.618 kb on - strand, within Atu5164 at 161.843 kb on + strand at 161.924 kb on + strand at 161.980 kb on - strand at 162.077 kb on + strand at 162.077 kb on + strand at 162.085 kb on - strand at 162.280 kb on - strand, within Atu5165 at 162.344 kb on + strand, within Atu5165 at 162.392 kb on + strand, within Atu5165 at 162.392 kb on + strand, within Atu5165 at 162.417 kb on - strand, within Atu5165
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 160,206 - Atu5161 0.44 +1.0 160,342 + Atu5161 0.70 +0.2 160,387 + Atu5161 0.78 +0.3 160,395 - Atu5161 0.79 -1.0 160,420 - Atu5161 0.84 +0.1 160,420 - Atu5161 0.84 +2.1 160,431 + Atu5161 0.86 +0.8 160,449 + Atu5161 0.89 -0.2 160,492 + -0.0 160,492 + -0.3 160,507 - -0.0 160,511 + -0.4 160,547 - -0.6 160,621 + Atu5162 0.16 -0.7 160,656 + Atu5162 0.22 +0.6 160,656 + Atu5162 0.22 -1.0 160,664 - Atu5162 0.23 -0.6 160,664 - Atu5162 0.23 -0.4 160,747 - Atu5162 0.35 -0.3 160,749 + Atu5162 0.35 -0.5 160,790 + Atu5162 0.41 -0.4 160,849 + Atu5162 0.50 +0.1 160,968 - Atu5162 0.67 -0.5 161,128 - -1.4 161,129 + -1.6 161,208 + -1.6 161,399 + Atu5163 0.69 -0.2 161,404 + Atu5163 0.71 -0.6 161,404 + Atu5163 0.71 -0.8 161,412 - Atu5163 0.74 -0.7 161,484 + -0.7 161,618 - Atu5164 0.37 +0.8 161,843 + -0.3 161,924 + -0.6 161,980 - -0.3 162,077 + -0.3 162,077 + -0.1 162,085 - -0.4 162,280 - Atu5165 0.15 -0.7 162,344 + Atu5165 0.18 -0.2 162,392 + Atu5165 0.20 -0.3 162,392 + Atu5165 0.20 -0.8 162,417 - Atu5165 0.21 -0.2
Or see this region's nucleotide sequence