Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3479 and Atu3480 are separated by 1 nucleotides Atu3480 and Atu3481 overlap by 11 nucleotides Atu3481 and Atu3482 are separated by 140 nucleotides
Atu3479: Atu3479 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 527,314 to 529,305
Atu3479
Atu3480: Atu3480 - hydroxymethylglutaryl-CoA lyase, at 529,307 to 530,233
Atu3480
Atu3481: Atu3481 - enoyl-CoA hydratase, at 530,223 to 530,999
Atu3481
Atu3482: Atu3482 - pantoate--beta-alanine ligase, at 531,140 to 532,018
Atu3482
Position (kb) 529
530
531 Strain fitness (log2 ratio) -2
-1
0
1
2 at 528.490 kb on + strand, within Atu3479 at 528.707 kb on + strand, within Atu3479 at 528.840 kb on - strand, within Atu3479 at 528.840 kb on - strand, within Atu3479 at 528.859 kb on - strand, within Atu3479 at 528.871 kb on + strand, within Atu3479 at 528.949 kb on - strand, within Atu3479 at 528.970 kb on + strand, within Atu3479 at 528.976 kb on + strand, within Atu3479 at 529.088 kb on + strand, within Atu3479 at 529.268 kb on + strand at 529.276 kb on - strand at 529.447 kb on - strand, within Atu3480 at 529.447 kb on - strand, within Atu3480 at 529.518 kb on - strand, within Atu3480 at 529.530 kb on - strand, within Atu3480 at 529.672 kb on - strand, within Atu3480 at 529.693 kb on + strand, within Atu3480 at 529.816 kb on - strand, within Atu3480 at 529.877 kb on + strand, within Atu3480 at 529.938 kb on + strand, within Atu3480 at 529.938 kb on + strand, within Atu3480 at 529.982 kb on + strand, within Atu3480 at 530.036 kb on - strand, within Atu3480 at 530.206 kb on + strand at 530.493 kb on + strand, within Atu3481 at 530.520 kb on + strand, within Atu3481 at 530.533 kb on + strand, within Atu3481 at 530.703 kb on - strand, within Atu3481 at 530.737 kb on + strand, within Atu3481 at 530.786 kb on + strand, within Atu3481 at 530.993 kb on + strand at 531.060 kb on - strand at 531.092 kb on + strand at 531.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 528,490 + Atu3479 0.59 -0.4 528,707 + Atu3479 0.70 -1.8 528,840 - Atu3479 0.77 -0.4 528,840 - Atu3479 0.77 -0.7 528,859 - Atu3479 0.78 -1.2 528,871 + Atu3479 0.78 -1.3 528,949 - Atu3479 0.82 -1.8 528,970 + Atu3479 0.83 -2.1 528,976 + Atu3479 0.83 -0.3 529,088 + Atu3479 0.89 +2.6 529,268 + -0.6 529,276 - -1.3 529,447 - Atu3480 0.15 -0.6 529,447 - Atu3480 0.15 -0.7 529,518 - Atu3480 0.23 -1.0 529,530 - Atu3480 0.24 -0.7 529,672 - Atu3480 0.39 +1.5 529,693 + Atu3480 0.42 -0.7 529,816 - Atu3480 0.55 -0.8 529,877 + Atu3480 0.61 -0.5 529,938 + Atu3480 0.68 -0.5 529,938 + Atu3480 0.68 -0.1 529,982 + Atu3480 0.73 +0.4 530,036 - Atu3480 0.79 -1.0 530,206 + -0.4 530,493 + Atu3481 0.35 -0.7 530,520 + Atu3481 0.38 -0.9 530,533 + Atu3481 0.40 -1.4 530,703 - Atu3481 0.62 +0.1 530,737 + Atu3481 0.66 -0.8 530,786 + Atu3481 0.72 -1.5 530,993 + -0.2 531,060 - -0.3 531,092 + -0.3 531,223 + -0.5
Or see this region's nucleotide sequence