Strain Fitness in Agrobacterium fabrum C58 around Atu4091

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,210,572	-		Atu4090	0.50	-1.1
1,210,619	+		Atu4090	0.52	-0.4
1,210,637	+		Atu4090	0.54	-0.7
1,210,658	+		Atu4090	0.55	+0.4
1,210,702	+		Atu4090	0.57	+0.7
1,210,762	+		Atu4090	0.61	-0.9
1,210,762	+		Atu4090	0.61	-0.1
1,210,762	+		Atu4090	0.61	-0.8
1,210,762	+		Atu4090	0.61	-1.3
1,210,762	+		Atu4090	0.61	-0.5
1,210,762	+		Atu4090	0.61	-0.5
1,210,762	+		Atu4090	0.61	-0.4
1,210,762	+		Atu4090	0.61	-0.5
1,210,770	-		Atu4090	0.61	-0.2
1,210,770	-		Atu4090	0.61	-0.3
1,210,770	-		Atu4090	0.61	-0.4
1,210,770	-		Atu4090	0.61	+1.8
1,210,770	-		Atu4090	0.61	-0.0
1,210,770	-		Atu4090	0.61	-0.5
1,210,770	-		Atu4090	0.61	-0.4
1,210,783	-		Atu4090	0.62	-0.6
1,210,836	+		Atu4090	0.65	-0.9
1,210,886	-		Atu4090	0.68	-1.0
1,210,925	+		Atu4090	0.71	-0.7
1,211,074	+		Atu4090	0.79	-0.5
1,211,074	+		Atu4090	0.79	-0.3
1,211,082	-		Atu4090	0.80	-0.9
1,211,082	-		Atu4090	0.80	-1.0
1,211,082	-		Atu4090	0.80	-0.7
1,211,083	-		Atu4090	0.80	-0.9
1,211,083	-		Atu4090	0.80	+1.3
1,211,120	+		Atu4090	0.82	-0.4
1,211,277	+				-0.2
1,211,282	+				+2.3
1,211,374	-				-0.4
1,211,392	-				-0.6
1,211,404	-				-0.0
1,211,406	-				-0.4
1,211,459	+				-0.7
1,211,480	+				-0.0
1,211,553	-				-0.6
1,211,888	-		Atu4091	0.25	-1.7
1,211,899	+		Atu4091	0.26	+0.9
1,211,994	-		Atu4091	0.32	-1.1
1,212,012	+		Atu4091	0.33	-0.3
1,212,017	+		Atu4091	0.33	-1.6
1,212,175	-		Atu4091	0.43	+0.2
1,212,179	-		Atu4091	0.44	-0.5
1,212,302	-		Atu4091	0.51	+0.7
1,212,374	+		Atu4091	0.56	-0.7
1,212,439	-		Atu4091	0.60	+0.7
1,212,454	+		Atu4091	0.61	+0.8
1,212,456	+		Atu4091	0.61	-0.1
1,212,470	-		Atu4091	0.62	-1.1
1,212,482	-		Atu4091	0.63	-0.5
1,212,607	+		Atu4091	0.71	-0.5
1,212,657	+		Atu4091	0.74	-0.6
1,212,670	-		Atu4091	0.75	-1.6
1,212,769	+		Atu4091	0.81	-0.5
1,212,808	-		Atu4091	0.84	+0.1
1,212,872	+		Atu4091	0.88	+0.1
1,212,915	+				-1.1
1,212,962	-				-0.8
1,213,008	+				-0.4
1,213,008	+				-0.0
1,213,082	+				-1.0
1,213,133	-				-0.1
1,213,196	+		Atu4092	0.11	-1.1
1,213,199	-		Atu4092	0.11	+0.7
1,213,276	+		Atu4092	0.17	-2.1
1,213,276	+		Atu4092	0.17	-0.9
1,213,276	+		Atu4092	0.17	-0.5
1,213,445	+		Atu4092	0.32	-0.1
1,213,487	-		Atu4092	0.36	-0.2
1,213,581	+		Atu4092	0.44	-0.2
1,213,589	-		Atu4092	0.44	-0.7
1,213,591	+		Atu4092	0.45	-0.4
1,213,597	-		Atu4092	0.45	+0.7
1,213,651	+		Atu4092	0.50	+0.1
1,213,658	+		Atu4092	0.50	-0.6
1,213,671	+		Atu4092	0.52	-1.1
1,213,757	-		Atu4092	0.59	+0.3
1,213,831	-		Atu4092	0.65	+0.3
1,213,967	+		Atu4092	0.77	-0.0
1,214,058	-		Atu4092	0.85	-0.2