Strain Fitness in Agrobacterium fabrum C58 around Atu4089

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,207,368	+				+0.0
1,207,397	+				-0.3
1,207,397	+				-0.6
1,207,460	+		Atu4088	0.16	-0.4
1,207,468	-		Atu4088	0.17	-0.7
1,207,468	-		Atu4088	0.17	+0.7
1,207,534	+		Atu4088	0.29	-0.2
1,207,560	-		Atu4088	0.33	-0.6
1,207,697	+		Atu4088	0.57	+0.0
1,207,840	+		Atu4088	0.82	+0.3
1,207,864	+		Atu4088	0.86	-0.5
1,207,864	+		Atu4088	0.86	-0.8
1,207,864	+		Atu4088	0.86	-0.1
1,207,872	-		Atu4088	0.87	-0.3
1,207,872	-		Atu4088	0.87	-2.4
1,207,958	-				+0.7
1,208,020	-				+0.3
1,208,056	+				-0.1
1,208,056	+				+0.6
1,208,113	-				+0.3
1,208,144	+				-0.7
1,208,144	+				-0.6
1,208,215	-				+0.0
1,208,238	+				-0.4
1,208,238	+				+0.1
1,208,294	+				-0.3
1,208,302	-				-0.6
1,208,338	-				-0.6
1,208,599	-		Atu4089	0.26	-0.4
1,208,633	+		Atu4089	0.28	-2.5
1,208,825	-		Atu4089	0.40	-0.5
1,208,892	-		Atu4089	0.45	+0.9
1,208,964	+		Atu4089	0.50	-1.3
1,209,092	-		Atu4089	0.58	-0.7
1,209,116	+		Atu4089	0.59	+0.1
1,209,156	+		Atu4089	0.62	-1.8
1,209,164	-		Atu4089	0.63	+0.1
1,209,249	-		Atu4089	0.68	-0.8
1,209,260	-		Atu4089	0.69	-1.0
1,209,337	-		Atu4089	0.74	-0.2
1,209,383	+		Atu4089	0.77	-0.8
1,209,414	+		Atu4089	0.79	-0.9
1,209,414	+		Atu4089	0.79	-0.5
1,209,422	-		Atu4089	0.80	-0.8
1,209,422	-		Atu4089	0.80	+1.7
1,209,434	+		Atu4089	0.80	-1.3
1,209,447	-		Atu4089	0.81	-0.1
1,209,467	-		Atu4089	0.82	-1.8
1,209,643	-				+0.2
1,209,767	+				-1.5
1,209,772	+				-0.6
1,209,772	+				+1.7
1,209,780	-				+0.5
1,209,780	-				-0.1
1,209,780	-				-0.7
1,209,780	-				-0.8
1,209,812	+				-0.5
1,209,812	+				+0.3
1,209,820	+				-0.4
1,209,820	-				+0.3
1,209,830	+				-0.7
1,209,838	-				-0.5
1,210,098	-		Atu4090	0.22	-0.4
1,210,204	-		Atu4090	0.28	-1.1
1,210,255	-		Atu4090	0.31	-0.5
1,210,361	+		Atu4090	0.37	-0.3
1,210,364	+		Atu4090	0.37	-0.1
1,210,417	+		Atu4090	0.41	-0.1
1,210,439	+		Atu4090	0.42	-1.2
1,210,467	+		Atu4090	0.43	-0.5
1,210,572	-		Atu4090	0.50	-1.1
1,210,619	+		Atu4090	0.52	-0.4
1,210,637	+		Atu4090	0.54	-0.7
1,210,658	+		Atu4090	0.55	+0.4
1,210,702	+		Atu4090	0.57	+0.7