Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3824 and Atu3826 are separated by 603 nucleotides Atu3826 and Atu3827 are separated by 2 nucleotides Atu3827 and Atu3828 are separated by 50 nucleotides
Atu3824: Atu3824 - hypothetical protein, at 920,424 to 921,407
Atu3824
Atu3826: Atu3826 - acyl-CoA hydrolase, at 922,011 to 922,841
Atu3826
Atu3827: Atu3827 - LysR family transcriptional regulator, at 922,844 to 923,731
Atu3827
Atu3828: Atu3828 - acetyltransferase, at 923,782 to 924,360
Atu3828
Position (kb) 922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 921.210 kb on - strand, within Atu3824 at 921.214 kb on + strand, within Atu3824 at 921.214 kb on + strand, within Atu3824 at 921.222 kb on - strand, within Atu3824 at 921.222 kb on - strand, within Atu3824 at 921.233 kb on - strand, within Atu3824 at 921.271 kb on + strand, within Atu3824 at 921.309 kb on - strand at 921.645 kb on + strand at 921.647 kb on + strand at 921.647 kb on + strand at 921.653 kb on - strand at 921.680 kb on + strand at 921.683 kb on - strand at 921.688 kb on - strand at 921.688 kb on - strand at 921.698 kb on - strand at 921.739 kb on + strand at 921.747 kb on - strand at 921.754 kb on - strand at 921.768 kb on + strand at 921.786 kb on + strand at 921.861 kb on + strand at 921.876 kb on - strand at 921.922 kb on + strand at 921.932 kb on - strand at 921.948 kb on + strand at 921.956 kb on - strand at 921.962 kb on - strand at 921.974 kb on + strand at 921.995 kb on + strand at 922.003 kb on - strand at 922.003 kb on - strand at 922.003 kb on - strand at 922.027 kb on - strand at 922.105 kb on - strand, within Atu3826 at 922.110 kb on + strand, within Atu3826 at 922.120 kb on + strand, within Atu3826 at 922.134 kb on - strand, within Atu3826 at 922.134 kb on - strand, within Atu3826 at 922.134 kb on - strand, within Atu3826 at 922.134 kb on - strand, within Atu3826 at 922.182 kb on + strand, within Atu3826 at 922.184 kb on + strand, within Atu3826 at 922.265 kb on + strand, within Atu3826 at 922.273 kb on - strand, within Atu3826 at 922.342 kb on + strand, within Atu3826 at 922.345 kb on - strand, within Atu3826 at 922.350 kb on - strand, within Atu3826 at 922.360 kb on + strand, within Atu3826 at 922.437 kb on + strand, within Atu3826 at 922.440 kb on - strand, within Atu3826 at 922.505 kb on - strand, within Atu3826 at 922.513 kb on - strand, within Atu3826 at 922.526 kb on - strand, within Atu3826 at 922.594 kb on - strand, within Atu3826 at 922.594 kb on - strand, within Atu3826 at 922.731 kb on - strand, within Atu3826 at 922.811 kb on + strand at 922.834 kb on + strand at 922.836 kb on + strand at 922.842 kb on - strand at 922.844 kb on - strand at 922.857 kb on - strand at 922.926 kb on - strand at 922.937 kb on + strand, within Atu3827 at 922.952 kb on - strand, within Atu3827 at 922.980 kb on - strand, within Atu3827 at 923.015 kb on - strand, within Atu3827 at 923.029 kb on - strand, within Atu3827 at 923.169 kb on - strand, within Atu3827 at 923.204 kb on - strand, within Atu3827 at 923.344 kb on - strand, within Atu3827 at 923.351 kb on + strand, within Atu3827 at 923.417 kb on + strand, within Atu3827 at 923.427 kb on + strand, within Atu3827 at 923.624 kb on + strand, within Atu3827 at 923.632 kb on - strand, within Atu3827 at 923.666 kb on - strand at 923.758 kb on + strand at 923.788 kb on + strand at 923.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 921,210 - Atu3824 0.80 +0.9 921,214 + Atu3824 0.80 -0.7 921,214 + Atu3824 0.80 -0.5 921,222 - Atu3824 0.81 +0.4 921,222 - Atu3824 0.81 -0.5 921,233 - Atu3824 0.82 +0.2 921,271 + Atu3824 0.86 +0.9 921,309 - +0.1 921,645 + -0.3 921,647 + -0.7 921,647 + -0.7 921,653 - +0.0 921,680 + -0.2 921,683 - -0.3 921,688 - +0.6 921,688 - +1.3 921,698 - +1.0 921,739 + -0.2 921,747 - -0.1 921,754 - -0.7 921,768 + +0.3 921,786 + -1.0 921,861 + -0.3 921,876 - -0.1 921,922 + -0.4 921,932 - -0.4 921,948 + +0.3 921,956 - -0.2 921,962 - +0.3 921,974 + +0.6 921,995 + -0.4 922,003 - -0.3 922,003 - -0.6 922,003 - +0.1 922,027 - +0.8 922,105 - Atu3826 0.11 -0.5 922,110 + Atu3826 0.12 +0.1 922,120 + Atu3826 0.13 -0.3 922,134 - Atu3826 0.15 -0.7 922,134 - Atu3826 0.15 -1.3 922,134 - Atu3826 0.15 -0.3 922,134 - Atu3826 0.15 -0.1 922,182 + Atu3826 0.21 -0.6 922,184 + Atu3826 0.21 +0.4 922,265 + Atu3826 0.31 +0.1 922,273 - Atu3826 0.32 -0.6 922,342 + Atu3826 0.40 -0.3 922,345 - Atu3826 0.40 -0.2 922,350 - Atu3826 0.41 -1.2 922,360 + Atu3826 0.42 -3.3 922,437 + Atu3826 0.51 -0.7 922,440 - Atu3826 0.52 -0.5 922,505 - Atu3826 0.59 +0.3 922,513 - Atu3826 0.60 -0.8 922,526 - Atu3826 0.62 -0.5 922,594 - Atu3826 0.70 -0.3 922,594 - Atu3826 0.70 +0.6 922,731 - Atu3826 0.87 +1.2 922,811 + +0.1 922,834 + +0.9 922,836 + +0.0 922,842 - +2.5 922,844 - +0.5 922,857 - +0.4 922,926 - +0.1 922,937 + Atu3827 0.10 -0.3 922,952 - Atu3827 0.12 -0.1 922,980 - Atu3827 0.15 -0.0 923,015 - Atu3827 0.19 -0.6 923,029 - Atu3827 0.21 +0.1 923,169 - Atu3827 0.37 +0.0 923,204 - Atu3827 0.41 -0.1 923,344 - Atu3827 0.56 -0.6 923,351 + Atu3827 0.57 -0.3 923,417 + Atu3827 0.65 +0.1 923,427 + Atu3827 0.66 +1.6 923,624 + Atu3827 0.88 +1.3 923,632 - Atu3827 0.89 +0.5 923,666 - -0.1 923,758 + -1.1 923,788 + -0.8 923,833 - +0.3
Or see this region's nucleotide sequence