Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3580 and Atu3581 are separated by 126 nucleotides Atu3581 and Atu3582 are separated by 4 nucleotides Atu3582 and Atu3583 are separated by 17 nucleotides
Atu3580: Atu3580 - methylmalonyl-CoA mutase, at 634,511 to 636,652
Atu3580
Atu3581: Atu3581 - propionyl-coenzyme A carboxylase, alpha polypeptide, at 636,779 to 638,782
Atu3581
Atu3582: Atu3582 - hypothetical protein, at 638,787 to 639,206
Atu3582
Atu3583: Atu3583 - hypothetical protein, at 639,224 to 639,784
Atu3583
Position (kb) 636
637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 635.864 kb on - strand, within Atu3580 at 635.908 kb on + strand, within Atu3580 at 635.909 kb on + strand, within Atu3580 at 635.909 kb on + strand, within Atu3580 at 636.060 kb on - strand, within Atu3580 at 636.136 kb on - strand, within Atu3580 at 636.199 kb on - strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.432 kb on + strand, within Atu3580 at 636.440 kb on - strand at 636.440 kb on - strand at 636.440 kb on - strand at 636.497 kb on + strand at 636.534 kb on + strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.559 kb on + strand at 636.559 kb on + strand at 636.565 kb on - strand at 636.626 kb on + strand at 636.669 kb on - strand at 636.806 kb on - strand at 636.808 kb on + strand at 636.816 kb on - strand at 636.816 kb on - strand at 636.826 kb on + strand at 636.898 kb on - strand at 636.972 kb on + strand at 636.975 kb on - strand at 636.993 kb on - strand, within Atu3581 at 637.030 kb on + strand, within Atu3581 at 637.030 kb on + strand, within Atu3581 at 637.072 kb on + strand, within Atu3581 at 637.165 kb on - strand, within Atu3581 at 637.187 kb on + strand, within Atu3581 at 637.195 kb on - strand, within Atu3581 at 637.291 kb on - strand, within Atu3581 at 637.531 kb on + strand, within Atu3581 at 637.618 kb on - strand, within Atu3581 at 637.677 kb on + strand, within Atu3581 at 637.723 kb on + strand, within Atu3581 at 637.788 kb on + strand, within Atu3581 at 637.803 kb on - strand, within Atu3581 at 637.834 kb on + strand, within Atu3581 at 638.038 kb on + strand, within Atu3581 at 638.107 kb on - strand, within Atu3581 at 638.224 kb on + strand, within Atu3581 at 638.277 kb on + strand, within Atu3581 at 638.277 kb on + strand, within Atu3581 at 638.315 kb on - strand, within Atu3581 at 638.372 kb on - strand, within Atu3581 at 638.382 kb on - strand, within Atu3581 at 638.385 kb on - strand, within Atu3581 at 638.599 kb on + strand at 638.601 kb on + strand at 638.601 kb on + strand at 638.601 kb on + strand at 638.607 kb on - strand at 638.609 kb on - strand at 638.628 kb on - strand at 638.638 kb on - strand at 638.638 kb on - strand at 638.688 kb on - strand at 638.877 kb on + strand, within Atu3582 at 638.970 kb on + strand, within Atu3582 at 639.011 kb on + strand, within Atu3582 at 639.013 kb on + strand, within Atu3582 at 639.016 kb on + strand, within Atu3582 at 639.026 kb on + strand, within Atu3582 at 639.186 kb on + strand at 639.338 kb on + strand, within Atu3583 at 639.346 kb on - strand, within Atu3583 at 639.346 kb on - strand, within Atu3583 at 639.463 kb on + strand, within Atu3583 at 639.582 kb on + strand, within Atu3583 at 639.590 kb on - strand, within Atu3583 at 639.743 kb on + strand at 639.748 kb on + strand at 639.756 kb on - strand at 639.756 kb on - strand at 639.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 635,864 - Atu3580 0.63 -0.2 635,908 + Atu3580 0.65 -0.4 635,909 + Atu3580 0.65 -0.7 635,909 + Atu3580 0.65 -2.3 636,060 - Atu3580 0.72 -1.2 636,136 - Atu3580 0.76 -0.8 636,199 - Atu3580 0.79 -0.6 636,432 + Atu3580 0.90 +0.2 636,432 + Atu3580 0.90 -0.2 636,432 + Atu3580 0.90 -3.1 636,432 + Atu3580 0.90 -0.3 636,432 + Atu3580 0.90 +0.0 636,432 + Atu3580 0.90 -1.7 636,432 + Atu3580 0.90 +0.4 636,432 + Atu3580 0.90 -0.6 636,432 + Atu3580 0.90 -0.4 636,432 + Atu3580 0.90 -0.6 636,440 - +0.2 636,440 - -1.4 636,440 - +0.1 636,497 + +0.2 636,534 + -0.2 636,542 - +0.8 636,542 - -0.7 636,559 + -1.6 636,559 + -0.3 636,565 - -0.5 636,626 + -0.4 636,669 - +1.2 636,806 - +0.2 636,808 + +0.0 636,816 - -0.3 636,816 - -1.2 636,826 + -0.6 636,898 - -0.7 636,972 + -0.6 636,975 - -0.3 636,993 - Atu3581 0.11 -0.9 637,030 + Atu3581 0.13 +1.4 637,030 + Atu3581 0.13 -0.1 637,072 + Atu3581 0.15 -0.7 637,165 - Atu3581 0.19 -0.5 637,187 + Atu3581 0.20 -0.1 637,195 - Atu3581 0.21 -1.5 637,291 - Atu3581 0.26 -0.5 637,531 + Atu3581 0.38 -0.1 637,618 - Atu3581 0.42 +0.8 637,677 + Atu3581 0.45 +0.6 637,723 + Atu3581 0.47 -0.1 637,788 + Atu3581 0.50 -0.7 637,803 - Atu3581 0.51 -0.8 637,834 + Atu3581 0.53 -1.0 638,038 + Atu3581 0.63 -0.2 638,107 - Atu3581 0.66 -1.4 638,224 + Atu3581 0.72 +0.0 638,277 + Atu3581 0.75 -0.3 638,277 + Atu3581 0.75 -0.5 638,315 - Atu3581 0.77 -0.1 638,372 - Atu3581 0.79 -0.3 638,382 - Atu3581 0.80 -0.2 638,385 - Atu3581 0.80 -1.1 638,599 + -0.7 638,601 + -0.3 638,601 + -1.8 638,601 + -1.0 638,607 - -0.3 638,609 - +1.2 638,628 - -0.4 638,638 - -0.4 638,638 - -0.3 638,688 - +0.2 638,877 + Atu3582 0.21 +0.1 638,970 + Atu3582 0.44 -0.6 639,011 + Atu3582 0.53 +0.3 639,013 + Atu3582 0.54 +0.3 639,016 + Atu3582 0.55 -0.7 639,026 + Atu3582 0.57 +1.2 639,186 + +0.4 639,338 + Atu3583 0.20 +0.1 639,346 - Atu3583 0.22 +0.3 639,346 - Atu3583 0.22 +0.4 639,463 + Atu3583 0.43 -0.7 639,582 + Atu3583 0.64 -0.1 639,590 - Atu3583 0.65 -0.3 639,743 + -1.8 639,748 + -0.2 639,756 - +2.2 639,756 - -0.4 639,756 - -0.3
Or see this region's nucleotide sequence