Strain Fitness in Pseudomonas putida KT2440 around PP_4519

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4517 and PP_4518 are separated by 7 nucleotidesPP_4518 and PP_4519 are separated by 311 nucleotidesPP_4519 and PP_4520 are separated by 62 nucleotidesPP_4520 and PP_4521 are separated by 64 nucleotides PP_4517: PP_4517 - conserved protein of unknown function, at 5,131,647 to 5,132,234 _4517 PP_4518: PP_4518 - conserved protein of unknown function, at 5,132,242 to 5,132,607 _4518 PP_4519: PP_4519 - Agglutination protein, at 5,132,919 to 5,134,277 _4519 PP_4520: PP_4520 - conserved protein of unknown function, at 5,134,340 to 5,134,939 _4520 PP_4521: PP_4521 - putative aerotaxis receptor, at 5,135,004 to 5,136,569 _4521 Position (kb) 5132 5133 5134 5135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5132.300 kb on + strand, within PP_4518at 5132.425 kb on + strand, within PP_4518at 5132.425 kb on + strand, within PP_4518at 5132.464 kb on + strand, within PP_4518at 5132.465 kb on - strand, within PP_4518at 5132.569 kb on + strand, within PP_4518at 5132.569 kb on + strand, within PP_4518at 5132.569 kb on + strand, within PP_4518at 5132.570 kb on - strand, within PP_4518at 5132.570 kb on - strand, within PP_4518at 5132.570 kb on - strand, within PP_4518at 5132.570 kb on - strand, within PP_4518at 5132.570 kb on - strand, within PP_4518at 5132.570 kb on - strandat 5132.683 kb on - strandat 5132.683 kb on - strandat 5132.691 kb on + strandat 5132.692 kb on - strandat 5132.692 kb on - strandat 5132.748 kb on + strandat 5132.749 kb on - strandat 5132.765 kb on - strandat 5132.767 kb on + strandat 5132.768 kb on - strandat 5132.788 kb on + strandat 5132.820 kb on + strandat 5132.820 kb on + strandat 5132.820 kb on + strandat 5132.820 kb on + strandat 5132.820 kb on + strandat 5132.821 kb on - strandat 5132.821 kb on - strandat 5132.821 kb on - strandat 5132.821 kb on - strandat 5132.848 kb on + strandat 5132.850 kb on + strandat 5132.850 kb on + strandat 5132.858 kb on - strandat 5132.915 kb on + strandat 5132.915 kb on + strandat 5132.915 kb on + strandat 5132.915 kb on + strandat 5132.915 kb on + strandat 5132.915 kb on + strandat 5132.915 kb on + strandat 5132.915 kb on + strandat 5132.916 kb on - strandat 5132.916 kb on - strandat 5132.950 kb on + strandat 5132.950 kb on + strandat 5132.951 kb on - strandat 5132.977 kb on + strandat 5132.977 kb on + strandat 5132.978 kb on - strandat 5132.978 kb on - strandat 5132.994 kb on - strandat 5133.022 kb on - strandat 5133.047 kb on + strandat 5133.048 kb on - strandat 5133.096 kb on + strand, within PP_4519at 5133.097 kb on - strand, within PP_4519at 5133.097 kb on - strand, within PP_4519at 5133.097 kb on - strand, within PP_4519at 5133.097 kb on - strand, within PP_4519at 5133.097 kb on - strand, within PP_4519at 5133.099 kb on + strand, within PP_4519at 5133.099 kb on + strand, within PP_4519at 5133.099 kb on + strand, within PP_4519at 5133.100 kb on - strand, within PP_4519at 5133.127 kb on - strand, within PP_4519at 5133.155 kb on + strand, within PP_4519at 5133.195 kb on + strand, within PP_4519at 5133.196 kb on - strand, within PP_4519at 5133.196 kb on - strand, within PP_4519at 5133.196 kb on - strand, within PP_4519at 5133.259 kb on + strand, within PP_4519at 5133.282 kb on - strand, within PP_4519at 5133.282 kb on - strand, within PP_4519at 5133.295 kb on - strand, within PP_4519at 5133.297 kb on + strand, within PP_4519at 5133.297 kb on + strand, within PP_4519at 5133.298 kb on - strand, within PP_4519at 5133.298 kb on - strand, within PP_4519at 5133.298 kb on - strand, within PP_4519at 5133.666 kb on + strand, within PP_4519at 5133.666 kb on + strand, within PP_4519at 5133.666 kb on + strand, within PP_4519at 5133.666 kb on + strand, within PP_4519at 5133.667 kb on - strand, within PP_4519at 5133.667 kb on - strand, within PP_4519at 5133.711 kb on + strand, within PP_4519at 5133.711 kb on + strand, within PP_4519at 5133.712 kb on - strand, within PP_4519at 5133.735 kb on + strand, within PP_4519at 5133.735 kb on + strand, within PP_4519at 5133.736 kb on - strand, within PP_4519at 5133.736 kb on - strand, within PP_4519at 5133.736 kb on - strand, within PP_4519at 5133.837 kb on + strand, within PP_4519at 5133.837 kb on + strand, within PP_4519at 5133.837 kb on + strand, within PP_4519at 5133.838 kb on - strand, within PP_4519at 5133.838 kb on - strand, within PP_4519at 5133.874 kb on + strand, within PP_4519at 5133.875 kb on - strand, within PP_4519at 5133.875 kb on - strand, within PP_4519at 5133.875 kb on - strand, within PP_4519at 5133.875 kb on - strand, within PP_4519at 5134.009 kb on - strand, within PP_4519at 5134.108 kb on - strand, within PP_4519at 5134.205 kb on + strandat 5134.206 kb on - strandat 5134.206 kb on - strandat 5134.357 kb on + strandat 5134.357 kb on + strandat 5134.358 kb on - strandat 5134.358 kb on - strandat 5134.358 kb on - strandat 5134.373 kb on + strandat 5134.373 kb on + strandat 5134.374 kb on - strandat 5134.587 kb on + strand, within PP_4520at 5134.588 kb on - strand, within PP_4520at 5134.588 kb on - strand, within PP_4520at 5134.588 kb on - strand, within PP_4520at 5134.663 kb on - strand, within PP_4520at 5134.663 kb on - strand, within PP_4520at 5134.663 kb on - strand, within PP_4520at 5134.663 kb on - strand, within PP_4520at 5134.889 kb on + strandat 5134.890 kb on - strandat 5134.890 kb on - strandat 5135.031 kb on - strandat 5135.031 kb on - strandat 5135.038 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
remove
5,132,300 + PP_4518 0.16 -2.6
5,132,425 + PP_4518 0.50 +0.3
5,132,425 + PP_4518 0.50 +0.1
5,132,464 + PP_4518 0.61 +0.1
5,132,465 - PP_4518 0.61 +1.1
5,132,569 + PP_4518 0.89 +0.3
5,132,569 + PP_4518 0.89 -0.1
5,132,569 + PP_4518 0.89 +0.6
5,132,570 - PP_4518 0.90 +0.3
5,132,570 - PP_4518 0.90 -0.2
5,132,570 - PP_4518 0.90 +0.6
5,132,570 - PP_4518 0.90 +0.4
5,132,570 - PP_4518 0.90 -0.2
5,132,570 - +0.4
5,132,683 - -0.9
5,132,683 - -0.3
5,132,691 + -0.1
5,132,692 - -1.3
5,132,692 - +0.4
5,132,748 + -0.6
5,132,749 - +0.2
5,132,765 - +0.3
5,132,767 + -0.9
5,132,768 - +0.7
5,132,788 + -0.0
5,132,820 + +0.1
5,132,820 + -0.7
5,132,820 + -1.0
5,132,820 + -0.7
5,132,820 + -1.6
5,132,821 - +0.8
5,132,821 - +0.7
5,132,821 - +0.7
5,132,821 - -0.5
5,132,848 + -2.4
5,132,850 + +0.1
5,132,850 + -0.9
5,132,858 - +0.9
5,132,915 + +0.9
5,132,915 + +0.4
5,132,915 + +0.4
5,132,915 + -0.1
5,132,915 + +0.6
5,132,915 + -0.5
5,132,915 + -1.1
5,132,915 + -0.3
5,132,916 - +2.1
5,132,916 - +0.4
5,132,950 + +0.6
5,132,950 + +0.4
5,132,951 - +1.2
5,132,977 + +0.1
5,132,977 + +0.8
5,132,978 - +0.6
5,132,978 - +0.7
5,132,994 - +1.0
5,133,022 - -0.3
5,133,047 + +0.9
5,133,048 - +0.9
5,133,096 + PP_4519 0.13 +0.8
5,133,097 - PP_4519 0.13 +0.8
5,133,097 - PP_4519 0.13 +1.6
5,133,097 - PP_4519 0.13 +1.0
5,133,097 - PP_4519 0.13 +0.4
5,133,097 - PP_4519 0.13 +1.2
5,133,099 + PP_4519 0.13 +0.6
5,133,099 + PP_4519 0.13 +1.4
5,133,099 + PP_4519 0.13 +0.2
5,133,100 - PP_4519 0.13 +0.7
5,133,127 - PP_4519 0.15 +0.7
5,133,155 + PP_4519 0.17 +0.7
5,133,195 + PP_4519 0.20 +0.3
5,133,196 - PP_4519 0.20 -1.7
5,133,196 - PP_4519 0.20 +0.7
5,133,196 - PP_4519 0.20 +0.5
5,133,259 + PP_4519 0.25 -0.0
5,133,282 - PP_4519 0.27 +0.3
5,133,282 - PP_4519 0.27 +0.4
5,133,295 - PP_4519 0.28 +0.5
5,133,297 + PP_4519 0.28 +0.6
5,133,297 + PP_4519 0.28 -0.9
5,133,298 - PP_4519 0.28 -2.5
5,133,298 - PP_4519 0.28 +1.0
5,133,298 - PP_4519 0.28 -0.8
5,133,666 + PP_4519 0.55 +1.1
5,133,666 + PP_4519 0.55 +0.0
5,133,666 + PP_4519 0.55 +0.1
5,133,666 + PP_4519 0.55 -1.0
5,133,667 - PP_4519 0.55 -0.3
5,133,667 - PP_4519 0.55 +0.8
5,133,711 + PP_4519 0.58 +0.2
5,133,711 + PP_4519 0.58 -0.1
5,133,712 - PP_4519 0.58 +0.3
5,133,735 + PP_4519 0.60 -0.3
5,133,735 + PP_4519 0.60 +0.1
5,133,736 - PP_4519 0.60 +0.5
5,133,736 - PP_4519 0.60 +0.3
5,133,736 - PP_4519 0.60 +0.9
5,133,837 + PP_4519 0.68 +1.1
5,133,837 + PP_4519 0.68 +1.3
5,133,837 + PP_4519 0.68 +0.4
5,133,838 - PP_4519 0.68 +0.9
5,133,838 - PP_4519 0.68 +0.9
5,133,874 + PP_4519 0.70 +0.5
5,133,875 - PP_4519 0.70 -2.1
5,133,875 - PP_4519 0.70 +1.0
5,133,875 - PP_4519 0.70 -0.7
5,133,875 - PP_4519 0.70 +0.6
5,134,009 - PP_4519 0.80 -0.2
5,134,108 - PP_4519 0.87 +2.4
5,134,205 + +1.0
5,134,206 - -0.2
5,134,206 - +1.0
5,134,357 + +0.3
5,134,357 + -0.3
5,134,358 - -2.8
5,134,358 - +0.6
5,134,358 - -1.2
5,134,373 + -1.9
5,134,373 + -0.8
5,134,374 - +0.7
5,134,587 + PP_4520 0.41 -0.2
5,134,588 - PP_4520 0.41 -0.8
5,134,588 - PP_4520 0.41 -0.6
5,134,588 - PP_4520 0.41 -0.5
5,134,663 - PP_4520 0.54 +2.5
5,134,663 - PP_4520 0.54 +0.0
5,134,663 - PP_4520 0.54 -1.1
5,134,663 - PP_4520 0.54 +0.1
5,134,889 + -0.1
5,134,890 - -0.3
5,134,890 - -0.6
5,135,031 - +0.5
5,135,031 - +0.8
5,135,038 + -0.1

Or see this region's nucleotide sequence