Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3727 and PP_3728 are separated by 196 nucleotides PP_3728 and PP_3729 overlap by 4 nucleotides PP_3729 and PP_3730 overlap by 4 nucleotides
PP_3727: PP_3727 - Amino-acid permease RocE, at 4,252,272 to 4,253,678
_3727
PP_3728: PP_3728 - Sensor histidine kinase/response regulator, at 4,253,875 to 4,256,127
_3728
PP_3729: PP_3729 - Periplasmic amino acid-binding protein-related protein, at 4,256,124 to 4,256,906
_3729
PP_3730: PP_3730 - Transcriptional regulatory protein AruR, at 4,256,903 to 4,257,619
_3730
Position (kb)
4253
4254
4255
4256
4257 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.925 kb on - strand, within PP_3727 at 4252.925 kb on - strand, within PP_3727 at 4252.925 kb on - strand, within PP_3727 at 4253.036 kb on - strand, within PP_3727 at 4253.036 kb on - strand, within PP_3727 at 4253.218 kb on + strand, within PP_3727 at 4253.358 kb on + strand, within PP_3727 at 4253.358 kb on + strand, within PP_3727 at 4253.383 kb on + strand, within PP_3727 at 4253.383 kb on + strand, within PP_3727 at 4253.422 kb on + strand, within PP_3727 at 4253.422 kb on + strand, within PP_3727 at 4253.422 kb on + strand, within PP_3727 at 4253.423 kb on - strand, within PP_3727 at 4253.500 kb on + strand, within PP_3727 at 4253.500 kb on + strand, within PP_3727 at 4253.501 kb on - strand, within PP_3727 at 4253.525 kb on - strand, within PP_3727 at 4253.525 kb on - strand, within PP_3727 at 4253.525 kb on - strand, within PP_3727 at 4253.565 kb on + strand at 4253.565 kb on + strand at 4253.565 kb on + strand at 4253.737 kb on - strand at 4253.749 kb on + strand at 4253.750 kb on - strand at 4253.764 kb on + strand at 4253.765 kb on - strand at 4253.765 kb on - strand at 4253.803 kb on + strand at 4253.804 kb on - strand at 4253.818 kb on + strand at 4253.818 kb on + strand at 4253.818 kb on + strand at 4253.818 kb on + strand at 4253.818 kb on + strand at 4253.819 kb on - strand at 4253.819 kb on - strand at 4253.831 kb on + strand at 4253.872 kb on - strand at 4253.917 kb on + strand at 4253.917 kb on + strand at 4253.918 kb on - strand at 4253.959 kb on + strand at 4253.959 kb on + strand at 4253.960 kb on - strand at 4254.242 kb on - strand, within PP_3728 at 4254.292 kb on + strand, within PP_3728 at 4254.303 kb on + strand, within PP_3728 at 4254.304 kb on - strand, within PP_3728 at 4254.393 kb on + strand, within PP_3728 at 4254.393 kb on + strand, within PP_3728 at 4254.394 kb on - strand, within PP_3728 at 4254.514 kb on + strand, within PP_3728 at 4254.708 kb on + strand, within PP_3728 at 4254.905 kb on - strand, within PP_3728 at 4254.980 kb on + strand, within PP_3728 at 4254.981 kb on - strand, within PP_3728 at 4254.981 kb on - strand, within PP_3728 at 4255.154 kb on + strand, within PP_3728 at 4255.155 kb on - strand, within PP_3728 at 4255.155 kb on - strand, within PP_3728 at 4255.199 kb on + strand, within PP_3728 at 4255.200 kb on - strand at 4255.272 kb on + strand, within PP_3728 at 4255.272 kb on + strand, within PP_3728 at 4255.421 kb on - strand, within PP_3728 at 4255.476 kb on + strand, within PP_3728 at 4255.623 kb on - strand, within PP_3728 at 4255.623 kb on - strand, within PP_3728 at 4255.623 kb on - strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4256.028 kb on - strand at 4256.161 kb on + strand at 4256.383 kb on + strand, within PP_3729 at 4256.383 kb on + strand, within PP_3729 at 4256.384 kb on - strand, within PP_3729 at 4256.384 kb on - strand, within PP_3729 at 4256.485 kb on + strand, within PP_3729 at 4256.486 kb on - strand, within PP_3729 at 4256.486 kb on - strand, within PP_3729 at 4256.497 kb on + strand, within PP_3729 at 4256.567 kb on - strand, within PP_3729 at 4256.615 kb on + strand, within PP_3729 at 4256.642 kb on - strand, within PP_3729 at 4256.932 kb on - strand at 4256.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs remove 4,252,924 + PP_3727 0.46 +0.2 4,252,924 + PP_3727 0.46 +0.6 4,252,924 + PP_3727 0.46 -0.0 4,252,924 + PP_3727 0.46 -2.8 4,252,924 + PP_3727 0.46 +1.4 4,252,925 - PP_3727 0.46 -0.3 4,252,925 - PP_3727 0.46 -1.4 4,252,925 - PP_3727 0.46 -2.0 4,253,036 - PP_3727 0.54 -1.8 4,253,036 - PP_3727 0.54 +1.3 4,253,218 + PP_3727 0.67 +1.0 4,253,358 + PP_3727 0.77 -0.2 4,253,358 + PP_3727 0.77 +0.4 4,253,383 + PP_3727 0.79 +0.6 4,253,383 + PP_3727 0.79 -0.7 4,253,422 + PP_3727 0.82 +0.0 4,253,422 + PP_3727 0.82 +0.2 4,253,422 + PP_3727 0.82 +1.0 4,253,423 - PP_3727 0.82 -0.9 4,253,500 + PP_3727 0.87 -0.9 4,253,500 + PP_3727 0.87 -2.7 4,253,501 - PP_3727 0.87 -2.1 4,253,525 - PP_3727 0.89 +0.3 4,253,525 - PP_3727 0.89 +2.4 4,253,525 - PP_3727 0.89 -1.3 4,253,565 + +1.3 4,253,565 + +1.2 4,253,565 + +0.7 4,253,737 - +0.6 4,253,749 + +1.5 4,253,750 - -3.0 4,253,764 + -0.5 4,253,765 - -4.0 4,253,765 - -0.9 4,253,803 + -0.4 4,253,804 - -1.0 4,253,818 + +0.7 4,253,818 + -2.5 4,253,818 + -2.1 4,253,818 + -0.6 4,253,818 + +0.0 4,253,819 - -2.1 4,253,819 - -0.2 4,253,831 + -0.1 4,253,872 - -0.0 4,253,917 + -0.4 4,253,917 + -0.5 4,253,918 - -0.7 4,253,959 + +1.2 4,253,959 + -0.8 4,253,960 - -0.7 4,254,242 - PP_3728 0.16 -0.1 4,254,292 + PP_3728 0.19 -2.7 4,254,303 + PP_3728 0.19 -0.1 4,254,304 - PP_3728 0.19 -1.1 4,254,393 + PP_3728 0.23 +0.4 4,254,393 + PP_3728 0.23 -4.3 4,254,394 - PP_3728 0.23 +0.3 4,254,514 + PP_3728 0.28 -0.8 4,254,708 + PP_3728 0.37 +0.5 4,254,905 - PP_3728 0.46 -3.5 4,254,980 + PP_3728 0.49 -0.3 4,254,981 - PP_3728 0.49 -1.6 4,254,981 - PP_3728 0.49 +3.1 4,255,154 + PP_3728 0.57 -2.3 4,255,155 - PP_3728 0.57 +0.2 4,255,155 - PP_3728 0.57 -3.0 4,255,199 + PP_3728 0.59 -0.9 4,255,200 - +2.1 4,255,272 + PP_3728 0.62 -2.9 4,255,272 + PP_3728 0.62 -1.8 4,255,421 - PP_3728 0.69 -1.6 4,255,476 + PP_3728 0.71 -0.2 4,255,623 - PP_3728 0.78 +1.0 4,255,623 - PP_3728 0.78 -0.2 4,255,623 - PP_3728 0.78 +0.8 4,255,700 + PP_3728 0.81 -1.1 4,255,700 + PP_3728 0.81 -0.8 4,255,700 + PP_3728 0.81 -0.8 4,255,700 + PP_3728 0.81 -2.6 4,255,782 - PP_3728 0.85 -0.2 4,255,782 - PP_3728 0.85 +0.5 4,255,782 - PP_3728 0.85 -0.7 4,255,782 - PP_3728 0.85 -0.1 4,256,028 - -0.6 4,256,161 + -3.9 4,256,383 + PP_3729 0.33 -2.9 4,256,383 + PP_3729 0.33 -3.7 4,256,384 - PP_3729 0.33 +1.0 4,256,384 - PP_3729 0.33 -0.9 4,256,485 + PP_3729 0.46 -0.1 4,256,486 - PP_3729 0.46 -2.7 4,256,486 - PP_3729 0.46 -1.8 4,256,497 + PP_3729 0.48 -3.1 4,256,567 - PP_3729 0.57 -2.9 4,256,615 + PP_3729 0.63 -1.2 4,256,642 - PP_3729 0.66 -0.6 4,256,932 - +1.4 4,256,932 - +0.3
Or see this region's nucleotide sequence