Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1769 and PP_1770 are separated by 164 nucleotides PP_1770 and PP_1771 overlap by 4 nucleotides PP_1771 and PP_1772 are separated by 70 nucleotides
PP_1769: PP_1769 - chorismate mutase/Prephenate dehydratase, at 1,975,069 to 1,976,172
_1769
PP_1770: PP_1770 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,976,337 to 1,978,577
_1770
PP_1771: PP_1771 - Cytidylate kinase, at 1,978,574 to 1,979,260
_1771
PP_1772: PP_1772 - 30S ribosomal protein S1, at 1,979,331 to 1,981,061
_1772
Position (kb) 1976
1977
1978
1979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1976.311 kb on + strand at 1976.311 kb on + strand at 1976.341 kb on + strand at 1976.341 kb on + strand at 1977.243 kb on + strand, within PP_1770 at 1977.243 kb on + strand, within PP_1770 at 1977.243 kb on + strand, within PP_1770 at 1977.254 kb on + strand, within PP_1770 at 1979.254 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs remove 1,976,311 + -0.1 1,976,311 + +0.5 1,976,341 + -1.3 1,976,341 + +2.2 1,977,243 + PP_1770 0.40 -0.8 1,977,243 + PP_1770 0.40 -3.7 1,977,243 + PP_1770 0.40 -0.7 1,977,254 + PP_1770 0.41 -2.3 1,979,254 + +0.5
Or see this region's nucleotide sequence