Strain Fitness in Pseudomonas putida KT2440 around PP_3761

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3759 and PP_3760 overlap by 4 nucleotidesPP_3760 and PP_3761 overlap by 4 nucleotidesPP_3761 and PP_3762 are separated by 247 nucleotidesPP_3762 and PP_3763 are separated by 69 nucleotides PP_3759: PP_3759 - Methylesterase, CheB-like, at 4,287,729 to 4,288,304 _3759 PP_3760: PP_3760 - putative methyltransferase, at 4,288,301 to 4,289,122 _3760 PP_3761: PP_3761 - Sensor histidine kinase/response regulator, at 4,289,119 to 4,292,586 _3761 PP_3762: PP_3762 - Response regulator, at 4,292,834 to 4,293,184 _3762 PP_3763: PP_3763 - putative CobF protein, at 4,293,254 to 4,294,003 _3763 Position (kb) 4289 4290 4291 4292 4293Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4288.126 kb on - strand, within PP_3759at 4288.309 kb on + strandat 4288.309 kb on + strandat 4288.384 kb on + strand, within PP_3760at 4288.596 kb on + strand, within PP_3760at 4288.596 kb on + strand, within PP_3760at 4288.596 kb on + strand, within PP_3760at 4288.596 kb on + strand, within PP_3760at 4288.596 kb on + strand, within PP_3760at 4288.599 kb on + strand, within PP_3760at 4288.671 kb on + strand, within PP_3760at 4288.723 kb on - strand, within PP_3760at 4288.776 kb on + strand, within PP_3760at 4288.776 kb on + strand, within PP_3760at 4288.777 kb on - strand, within PP_3760at 4288.914 kb on + strand, within PP_3760at 4289.037 kb on + strand, within PP_3760at 4289.052 kb on + strandat 4289.058 kb on + strandat 4289.058 kb on + strandat 4289.059 kb on - strandat 4289.059 kb on - strandat 4289.067 kb on + strandat 4289.068 kb on - strandat 4289.196 kb on - strandat 4289.196 kb on - strandat 4289.460 kb on + strandat 4289.460 kb on + strandat 4289.461 kb on - strandat 4289.461 kb on - strandat 4289.463 kb on + strandat 4289.464 kb on - strandat 4289.464 kb on - strandat 4289.464 kb on - strandat 4289.648 kb on + strand, within PP_3761at 4289.649 kb on - strand, within PP_3761at 4289.696 kb on + strand, within PP_3761at 4289.697 kb on - strand, within PP_3761at 4289.802 kb on - strand, within PP_3761at 4289.802 kb on - strand, within PP_3761at 4289.802 kb on - strand, within PP_3761at 4289.802 kb on - strand, within PP_3761at 4290.011 kb on + strand, within PP_3761at 4290.174 kb on - strand, within PP_3761at 4290.225 kb on + strand, within PP_3761at 4290.225 kb on + strand, within PP_3761at 4290.225 kb on + strand, within PP_3761at 4290.225 kb on + strand, within PP_3761at 4290.225 kb on + strand, within PP_3761at 4290.225 kb on + strand, within PP_3761at 4290.226 kb on - strand, within PP_3761at 4290.226 kb on - strandat 4290.226 kb on - strand, within PP_3761at 4290.226 kb on - strand, within PP_3761at 4290.226 kb on - strand, within PP_3761at 4290.226 kb on - strand, within PP_3761at 4290.228 kb on - strand, within PP_3761at 4290.228 kb on - strandat 4290.572 kb on + strand, within PP_3761at 4290.572 kb on + strand, within PP_3761at 4290.573 kb on - strand, within PP_3761at 4290.992 kb on + strand, within PP_3761at 4290.993 kb on - strand, within PP_3761at 4290.993 kb on - strand, within PP_3761at 4290.999 kb on - strand, within PP_3761at 4291.129 kb on - strand, within PP_3761at 4291.130 kb on + strand, within PP_3761at 4291.130 kb on + strand, within PP_3761at 4291.131 kb on - strand, within PP_3761at 4291.131 kb on - strand, within PP_3761at 4291.131 kb on - strand, within PP_3761at 4291.131 kb on - strand, within PP_3761at 4291.131 kb on - strand, within PP_3761at 4291.131 kb on - strand, within PP_3761at 4291.131 kb on - strand, within PP_3761at 4291.715 kb on + strandat 4291.757 kb on + strand, within PP_3761at 4291.757 kb on + strand, within PP_3761at 4291.757 kb on + strand, within PP_3761at 4291.937 kb on + strand, within PP_3761at 4291.937 kb on + strand, within PP_3761at 4291.938 kb on - strand, within PP_3761at 4291.938 kb on - strand, within PP_3761at 4291.938 kb on - strand, within PP_3761at 4291.938 kb on - strand, within PP_3761at 4291.938 kb on - strand, within PP_3761at 4291.938 kb on - strand, within PP_3761at 4291.976 kb on + strand, within PP_3761at 4291.977 kb on - strand, within PP_3761at 4292.162 kb on + strand, within PP_3761at 4292.468 kb on + strandat 4292.468 kb on + strandat 4292.469 kb on - strandat 4292.532 kb on + strandat 4292.532 kb on + strandat 4292.604 kb on - strandat 4292.646 kb on + strandat 4292.668 kb on + strandat 4292.669 kb on - strandat 4292.679 kb on - strandat 4292.749 kb on + strandat 4292.749 kb on + strandat 4292.749 kb on + strandat 4292.750 kb on - strandat 4292.750 kb on - strandat 4292.750 kb on - strandat 4292.794 kb on + strandat 4292.803 kb on + strandat 4292.803 kb on + strandat 4292.804 kb on - strandat 4292.804 kb on - strandat 4292.868 kb on + strandat 4292.868 kb on + strandat 4292.869 kb on - strand, within PP_3762at 4292.869 kb on - strand, within PP_3762at 4292.906 kb on + strand, within PP_3762at 4292.906 kb on + strand, within PP_3762at 4292.949 kb on + strand, within PP_3762at 4293.166 kb on + strandat 4293.166 kb on + strandat 4293.167 kb on - strandat 4293.210 kb on - strandat 4293.276 kb on + strandat 4293.276 kb on + strandat 4293.276 kb on + strandat 4293.276 kb on + strandat 4293.277 kb on - strandat 4293.277 kb on - strandat 4293.277 kb on - strandat 4293.277 kb on - strandat 4293.277 kb on - strandat 4293.277 kb on - strandat 4293.277 kb on - strandat 4293.280 kb on + strandat 4293.280 kb on + strandat 4293.281 kb on - strandat 4293.281 kb on - strandat 4293.299 kb on - strandat 4293.391 kb on - strand, within PP_3763at 4293.402 kb on + strand, within PP_3763at 4293.403 kb on - strand, within PP_3763at 4293.403 kb on - strand, within PP_3763at 4293.403 kb on - strand, within PP_3763at 4293.403 kb on - strand, within PP_3763

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
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4,288,126 - PP_3759 0.69 -0.8
4,288,309 + +0.1
4,288,309 + +0.4
4,288,384 + PP_3760 0.10 -1.0
4,288,596 + PP_3760 0.36 -1.1
4,288,596 + PP_3760 0.36 -1.3
4,288,596 + PP_3760 0.36 -1.3
4,288,596 + PP_3760 0.36 -1.3
4,288,596 + PP_3760 0.36 -0.5
4,288,599 + PP_3760 0.36 -2.9
4,288,671 + PP_3760 0.45 -2.0
4,288,723 - PP_3760 0.51 -1.0
4,288,776 + PP_3760 0.58 -3.1
4,288,776 + PP_3760 0.58 -0.1
4,288,777 - PP_3760 0.58 -2.2
4,288,914 + PP_3760 0.75 -1.1
4,289,037 + PP_3760 0.90 -1.5
4,289,052 + -0.7
4,289,058 + -1.2
4,289,058 + -2.4
4,289,059 - -1.7
4,289,059 - -0.7
4,289,067 + -2.7
4,289,068 - -1.6
4,289,196 - -1.3
4,289,196 - +0.5
4,289,460 + +0.2
4,289,460 + +1.1
4,289,461 - +1.1
4,289,461 - -0.1
4,289,463 + +0.1
4,289,464 - -0.2
4,289,464 - +1.2
4,289,464 - +0.3
4,289,648 + PP_3761 0.15 -0.1
4,289,649 - PP_3761 0.15 +2.0
4,289,696 + PP_3761 0.17 +0.1
4,289,697 - PP_3761 0.17 +0.2
4,289,802 - PP_3761 0.20 +0.3
4,289,802 - PP_3761 0.20 +0.5
4,289,802 - PP_3761 0.20 +0.7
4,289,802 - PP_3761 0.20 +0.0
4,290,011 + PP_3761 0.26 +1.1
4,290,174 - PP_3761 0.30 +0.0
4,290,225 + PP_3761 0.32 +0.7
4,290,225 + PP_3761 0.32 +0.3
4,290,225 + PP_3761 0.32 +0.3
4,290,225 + PP_3761 0.32 -0.3
4,290,225 + PP_3761 0.32 +0.2
4,290,225 + PP_3761 0.32 +0.4
4,290,226 - PP_3761 0.32 -0.2
4,290,226 - +0.2
4,290,226 - PP_3761 0.32 -0.4
4,290,226 - PP_3761 0.32 +0.1
4,290,226 - PP_3761 0.32 +0.4
4,290,226 - PP_3761 0.32 +0.7
4,290,228 - PP_3761 0.32 -0.9
4,290,228 - +0.1
4,290,572 + PP_3761 0.42 +0.4
4,290,572 + PP_3761 0.42 -0.0
4,290,573 - PP_3761 0.42 +0.0
4,290,992 + PP_3761 0.54 -0.4
4,290,993 - PP_3761 0.54 +0.2
4,290,993 - PP_3761 0.54 +0.1
4,290,999 - PP_3761 0.54 +0.7
4,291,129 - PP_3761 0.58 +0.5
4,291,130 + PP_3761 0.58 +0.3
4,291,130 + PP_3761 0.58 +0.7
4,291,131 - PP_3761 0.58 -0.8
4,291,131 - PP_3761 0.58 +0.6
4,291,131 - PP_3761 0.58 -0.2
4,291,131 - PP_3761 0.58 +1.0
4,291,131 - PP_3761 0.58 +1.1
4,291,131 - PP_3761 0.58 +0.2
4,291,131 - PP_3761 0.58 +0.6
4,291,715 + -1.0
4,291,757 + PP_3761 0.76 -0.1
4,291,757 + PP_3761 0.76 +1.1
4,291,757 + PP_3761 0.76 +0.9
4,291,937 + PP_3761 0.81 -0.4
4,291,937 + PP_3761 0.81 -0.3
4,291,938 - PP_3761 0.81 +0.2
4,291,938 - PP_3761 0.81 +0.3
4,291,938 - PP_3761 0.81 +0.8
4,291,938 - PP_3761 0.81 +0.3
4,291,938 - PP_3761 0.81 +0.3
4,291,938 - PP_3761 0.81 -0.1
4,291,976 + PP_3761 0.82 +0.1
4,291,977 - PP_3761 0.82 -0.0
4,292,162 + PP_3761 0.88 +0.5
4,292,468 + +1.4
4,292,468 + -0.0
4,292,469 - +0.3
4,292,532 + +0.1
4,292,532 + -0.1
4,292,604 - -0.6
4,292,646 + +0.2
4,292,668 + +0.5
4,292,669 - +1.1
4,292,679 - -0.5
4,292,749 + +0.8
4,292,749 + -0.4
4,292,749 + +0.7
4,292,750 - -1.0
4,292,750 - -0.4
4,292,750 - -0.8
4,292,794 + +0.3
4,292,803 + +0.9
4,292,803 + +1.4
4,292,804 - -0.1
4,292,804 - -2.3
4,292,868 + +0.1
4,292,868 + -0.0
4,292,869 - PP_3762 0.10 -2.2
4,292,869 - PP_3762 0.10 -0.2
4,292,906 + PP_3762 0.21 +0.4
4,292,906 + PP_3762 0.21 +0.6
4,292,949 + PP_3762 0.33 +0.9
4,293,166 + +1.2
4,293,166 + +1.4
4,293,167 - -0.0
4,293,210 - +1.3
4,293,276 + +1.3
4,293,276 + +0.1
4,293,276 + +1.2
4,293,276 + +1.0
4,293,277 - +0.1
4,293,277 - -0.5
4,293,277 - +0.2
4,293,277 - +0.2
4,293,277 - +0.8
4,293,277 - +0.2
4,293,277 - -1.3
4,293,280 + -0.8
4,293,280 + +0.4
4,293,281 - +0.9
4,293,281 - -1.3
4,293,299 - +0.2
4,293,391 - PP_3763 0.18 +0.2
4,293,402 + PP_3763 0.20 +0.3
4,293,403 - PP_3763 0.20 +0.0
4,293,403 - PP_3763 0.20 +0.4
4,293,403 - PP_3763 0.20 -0.8
4,293,403 - PP_3763 0.20 +1.0

Or see this region's nucleotide sequence