Strain Fitness in Pseudomonas putida KT2440 around PP_5368

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
6,116,911	+		PP_5366	0.80	+0.6
6,116,911	+		PP_5366	0.80	-1.9
6,116,911	+		PP_5366	0.80	-1.9
6,116,911	+		PP_5366	0.80	-1.2
6,116,911	+		PP_5366	0.80	+2.3
6,116,911	+		PP_5366	0.80	-1.2
6,116,912	-				+0.1
6,116,912	-		PP_5366	0.80	-1.0
6,116,912	-		PP_5366	0.80	-2.1
6,116,912	-		PP_5366	0.80	-0.3
6,117,014	+		PP_5366	0.87	-1.1
6,117,075	+				+0.1
6,117,076	-				-1.2
6,117,102	+				+0.9
6,117,102	+				+0.7
6,117,251	+				+0.8
6,117,251	+				-2.2
6,117,252	-				+1.3
6,117,252	-				+0.8
6,117,252	-				+1.1
6,117,260	-				+2.6
6,117,272	-				-1.9
6,117,287	+				+0.1
6,117,348	+				+0.6
6,117,349	-				-1.3
6,117,349	-				+1.1
6,117,562	+		PP_5367	0.55	-2.3
6,117,563	-		PP_5367	0.55	-0.6
6,117,612	+		PP_5367	0.65	-3.0
6,117,613	-		PP_5367	0.66	+1.3
6,117,716	+		PP_5367	0.87	+0.4
6,117,723	+		PP_5367	0.89	+0.4
6,117,723	+		PP_5367	0.89	+1.0
6,117,724	-		PP_5367	0.89	+1.0
6,117,724	-		PP_5367	0.89	+0.5
6,117,724	-		PP_5367	0.89	+0.8
6,117,724	-		PP_5367	0.89	-0.4
6,117,724	-		PP_5367	0.89	-0.8
6,117,747	+				+1.3
6,117,747	+				-2.7
6,117,785	-				-3.7
6,117,790	+				-0.2
6,117,790	+				-1.2
6,117,790	+				-1.4
6,117,790	+				+0.2
6,117,790	+				+1.7
6,117,791	-				-0.9
6,117,791	-				+0.3
6,117,850	+				-0.2
6,117,850	+				+1.4
6,117,850	+				+0.2
6,117,851	-				-1.9
6,117,851	-				-0.0
6,117,851	-				-0.0
6,117,851	-				+1.0
6,117,851	-				-0.0
6,117,851	-				+0.0
6,117,851	-				-1.8
6,117,908	+				-2.6
6,117,909	-				+0.4
6,117,915	+				+0.9
6,117,916	-				+1.3
6,117,916	-				-0.4
6,117,917	+				+0.1
6,117,918	-				-0.4
6,117,918	-				+0.6
6,117,932	+				-0.3
6,117,939	+				+1.8
6,117,939	+				+0.1
6,117,940	-				-1.0
6,117,958	+				+0.2
6,117,958	+				-0.5
6,117,958	+				+1.4
6,117,959	-				+1.6
6,117,959	-				+0.8
6,118,059	+		PP_5368	0.16	-1.3
6,118,059	+		PP_5368	0.16	-0.8
6,118,059	+		PP_5368	0.16	+1.6
6,118,059	+		PP_5368	0.16	+1.0
6,118,060	-		PP_5368	0.16	-2.4
6,118,077	+		PP_5368	0.18	+1.5
6,118,077	+		PP_5368	0.18	+0.2
6,118,077	+		PP_5368	0.18	+0.2
6,118,077	+		PP_5368	0.18	+0.5
6,118,077	+		PP_5368	0.18	+2.8
6,118,077	-		PP_5368	0.18	+3.4
6,118,078	-		PP_5368	0.18	-0.1
6,118,078	-		PP_5368	0.18	-0.5
6,118,111	+		PP_5368	0.21	-2.3
6,118,112	-		PP_5368	0.21	-1.5
6,118,198	+		PP_5368	0.28	-2.8
6,118,199	-		PP_5368	0.28	-2.8
6,118,199	-		PP_5368	0.28	+0.1
6,118,199	-		PP_5368	0.28	-0.5
6,118,203	+		PP_5368	0.29	-0.1
6,118,203	+		PP_5368	0.29	-1.3
6,118,204	-		PP_5368	0.29	+0.7
6,118,204	-		PP_5368	0.29	-0.0
6,118,204	-		PP_5368	0.29	+1.7
6,118,204	-		PP_5368	0.29	-1.2
6,118,204	-		PP_5368	0.29	+2.4
6,118,204	-		PP_5368	0.29	-0.2
6,118,204	-		PP_5368	0.29	-0.9
6,118,250	+		PP_5368	0.33	-1.8
6,118,265	+		PP_5368	0.34	-1.8
6,118,265	+		PP_5368	0.34	-1.5
6,118,276	-		PP_5368	0.35	-0.1
6,118,276	-		PP_5368	0.35	+0.6
6,118,276	-		PP_5368	0.35	-2.3
6,118,284	+		PP_5368	0.36	-0.5
6,118,285	-		PP_5368	0.36	+0.7
6,118,337	+		PP_5368	0.40	-1.8
6,118,337	+		PP_5368	0.40	-3.1
6,118,338	-		PP_5368	0.40	-1.7
6,118,376	-		PP_5368	0.44	-2.3
6,118,433	+		PP_5368	0.49	-2.5
6,118,434	-		PP_5368	0.49	-0.6
6,118,442	-		PP_5368	0.49	-1.4
6,118,442	-		PP_5368	0.49	-0.2
6,118,442	-		PP_5368	0.49	-0.8
6,118,593	+		PP_5368	0.62	-1.5
6,118,593	+		PP_5368	0.62	-0.7
6,118,609	+		PP_5368	0.64	-0.8
6,118,609	+		PP_5368	0.64	+0.8
6,118,609	+		PP_5368	0.64	-0.3
6,118,610	-		PP_5368	0.64	-1.4
6,118,610	-		PP_5368	0.64	+0.0
6,118,610	-		PP_5368	0.64	+0.0
6,118,610	-		PP_5368	0.64	-0.8
6,118,610	-		PP_5368	0.64	-0.6
6,118,624	+		PP_5368	0.65	-0.6
6,118,624	+		PP_5368	0.65	+0.2
6,118,624	+		PP_5368	0.65	-3.1
6,118,625	-		PP_5368	0.65	+0.7
6,118,625	-		PP_5368	0.65	+0.7
6,118,625	-		PP_5368	0.65	+0.5
6,118,625	-		PP_5368	0.65	-1.5
6,118,625	-		PP_5368	0.65	+1.6
6,118,625	-		PP_5368	0.65	+1.0
6,118,625	-		PP_5368	0.65	-1.9
6,118,746	+		PP_5368	0.76	+0.5
6,118,746	+		PP_5368	0.76	-0.7
6,118,747	-		PP_5368	0.76	-0.6
6,118,889	+		PP_5368	0.88	+0.4
6,118,890	-		PP_5368	0.88	-1.8
6,118,905	+		PP_5368	0.89	-0.5
6,118,905	+		PP_5368	0.89	+0.9
6,118,906	-		PP_5368	0.89	+0.8
6,118,945	+				-0.0
6,118,945	+				+0.5
6,118,945	+				-1.6
6,118,945	+				-0.4
6,118,945	+				-0.6
6,118,946	-				-0.0
6,118,946	-				-0.4
6,118,946	-				-0.5
6,118,993	+				-0.0
6,118,993	+				+1.1
6,118,994	-				+1.8
6,118,994	-				+0.3
6,118,994	-				+0.6
6,119,017	-				-2.9
6,119,056	-				-0.9
6,119,104	+				-0.6
6,119,104	+				+3.4
6,119,105	-				-1.3
6,119,105	-				-0.0
6,119,105	-				+0.1
6,119,128	+				-1.2
6,119,128	+				+0.8
6,119,128	+				+1.5
6,119,129	-				+0.3
6,119,129	-				-0.8
6,119,182	+				+0.0
6,119,242	+				-1.2
6,119,242	+				-0.5
6,119,243	-				+0.3
6,119,332	-				+1.0
6,119,429	+				-1.3
6,119,429	+				+0.0
6,119,430	-				-2.2
6,119,430	-				-1.4
6,119,430	-				+0.8
6,119,440	+				-0.6
6,119,440	+				-2.3
6,119,441	-				+2.7
6,119,441	-				+0.4
6,119,441	-				+0.1
6,119,483	-				+0.7
6,119,641	-		PP_5370	0.16	-0.8
6,119,668	-		PP_5370	0.18	-0.0
6,119,674	+		PP_5370	0.19	-0.7
6,119,675	-		PP_5370	0.19	-0.3
6,119,694	+		PP_5370	0.20	+0.6
6,119,694	+		PP_5370	0.20	+0.6
6,119,695	-		PP_5370	0.20	-0.5
6,119,695	-		PP_5370	0.20	+1.0
6,119,695	-		PP_5370	0.20	+1.0
6,119,710	+		PP_5370	0.21	-0.9
6,119,717	-		PP_5370	0.22	+1.0
6,119,801	+		PP_5370	0.28	-2.4
6,119,802	-		PP_5370	0.28	+0.8
6,119,832	+		PP_5370	0.31	-1.4
6,119,832	+		PP_5370	0.31	+0.3
6,119,833	-		PP_5370	0.31	+0.6
6,119,833	-		PP_5370	0.31	-2.5
6,119,833	-		PP_5370	0.31	+0.6
6,119,833	-		PP_5370	0.31	+0.8
6,119,836	+		PP_5370	0.31	+1.2
6,119,836	+		PP_5370	0.31	+0.7
6,119,836	+		PP_5370	0.31	+0.8
6,119,836	+		PP_5370	0.31	+0.1
6,119,836	+		PP_5370	0.31	-1.9
6,119,837	-		PP_5370	0.31	-1.0
6,119,837	-		PP_5370	0.31	-0.5
6,120,006	+		PP_5370	0.44	+1.1
6,120,007	-		PP_5370	0.44	+2.9