Strain Fitness in Pseudomonas putida KT2440 around PP_0823

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0822 and PP_0823 overlap by 1 nucleotidesPP_0823 and PP_0824 are separated by 126 nucleotidesPP_0824 and PP_0825 overlap by 4 nucleotides PP_0822: PP_0822 - tRNA 2-selenouridine synthase, at 960,268 to 961,380 _0822 PP_0823: PP_0823 - Selenide, water dikinase, at 961,380 to 962,414 _0823 PP_0824: PP_0824 - phosphonate transport system-binding protein, at 962,541 to 963,395 _0824 PP_0825: PP_0825 - phosphonates import ATP-binding protein, at 963,392 to 964,201 _0825 Position (kb) 961 962 963Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 960.386 kb on + strand, within PP_0822at 960.387 kb on - strand, within PP_0822at 960.389 kb on + strand, within PP_0822at 960.390 kb on - strand, within PP_0822at 960.430 kb on + strand, within PP_0822at 960.430 kb on + strand, within PP_0822at 960.515 kb on + strand, within PP_0822at 960.516 kb on - strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.519 kb on + strand, within PP_0822at 960.520 kb on - strand, within PP_0822at 960.614 kb on + strand, within PP_0822at 960.692 kb on + strand, within PP_0822at 960.692 kb on + strand, within PP_0822at 960.693 kb on - strand, within PP_0822at 960.978 kb on + strand, within PP_0822at 960.996 kb on + strand, within PP_0822at 960.996 kb on + strand, within PP_0822at 960.996 kb on + strand, within PP_0822at 960.996 kb on + strand, within PP_0822at 960.997 kb on - strand, within PP_0822at 961.010 kb on + strand, within PP_0822at 961.039 kb on - strandat 961.039 kb on - strand, within PP_0822at 961.224 kb on - strand, within PP_0822at 961.273 kb on + strandat 961.497 kb on + strand, within PP_0823at 961.497 kb on + strand, within PP_0823at 961.498 kb on - strand, within PP_0823at 961.576 kb on + strand, within PP_0823at 961.577 kb on - strand, within PP_0823at 961.585 kb on + strand, within PP_0823at 961.640 kb on + strand, within PP_0823at 961.641 kb on - strand, within PP_0823at 961.664 kb on - strand, within PP_0823at 961.664 kb on - strand, within PP_0823at 961.664 kb on - strand, within PP_0823at 961.895 kb on - strand, within PP_0823at 961.895 kb on - strand, within PP_0823at 961.943 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.140 kb on + strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.141 kb on - strand, within PP_0823at 962.185 kb on + strand, within PP_0823at 962.386 kb on + strandat 962.387 kb on - strandat 962.414 kb on + strandat 962.414 kb on + strandat 962.450 kb on - strandat 962.450 kb on - strandat 962.466 kb on - strandat 962.480 kb on + strandat 962.481 kb on - strandat 962.481 kb on - strandat 962.483 kb on - strandat 962.483 kb on - strandat 962.725 kb on + strand, within PP_0824at 962.725 kb on + strand, within PP_0824at 962.849 kb on - strand, within PP_0824at 962.849 kb on - strand, within PP_0824at 962.986 kb on - strand, within PP_0824at 963.008 kb on + strand, within PP_0824at 963.009 kb on - strand, within PP_0824at 963.024 kb on + strand, within PP_0824at 963.025 kb on - strand, within PP_0824at 963.189 kb on + strand, within PP_0824at 963.190 kb on - strand, within PP_0824at 963.199 kb on - strand, within PP_0824at 963.290 kb on + strand, within PP_0824at 963.291 kb on - strand, within PP_0824at 963.348 kb on + strandat 963.348 kb on + strandat 963.348 kb on + strandat 963.348 kb on + strandat 963.349 kb on - strandat 963.349 kb on - strandat 963.349 kb on - strandat 963.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
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960,386 + PP_0822 0.11 +0.1
960,387 - PP_0822 0.11 -0.8
960,389 + PP_0822 0.11 +0.8
960,390 - PP_0822 0.11 -0.5
960,430 + PP_0822 0.15 +1.3
960,430 + PP_0822 0.15 +0.1
960,515 + PP_0822 0.22 -1.5
960,516 - PP_0822 0.22 +1.5
960,519 + PP_0822 0.23 -1.5
960,519 + PP_0822 0.23 -0.5
960,519 + PP_0822 0.23 +1.7
960,519 + PP_0822 0.23 +0.7
960,519 + PP_0822 0.23 +1.3
960,520 - PP_0822 0.23 +0.5
960,614 + PP_0822 0.31 -2.4
960,692 + PP_0822 0.38 +0.7
960,692 + PP_0822 0.38 +0.2
960,693 - PP_0822 0.38 +1.2
960,978 + PP_0822 0.64 -1.0
960,996 + PP_0822 0.65 +0.5
960,996 + PP_0822 0.65 +1.3
960,996 + PP_0822 0.65 +0.3
960,996 + PP_0822 0.65 -0.5
960,997 - PP_0822 0.65 -0.7
961,010 + PP_0822 0.67 -0.6
961,039 - +0.8
961,039 - PP_0822 0.69 -1.2
961,224 - PP_0822 0.86 -0.7
961,273 + -1.0
961,497 + PP_0823 0.11 +2.3
961,497 + PP_0823 0.11 +0.8
961,498 - PP_0823 0.11 -2.6
961,576 + PP_0823 0.19 -0.8
961,577 - PP_0823 0.19 -1.3
961,585 + PP_0823 0.20 +1.8
961,640 + PP_0823 0.25 +0.2
961,641 - PP_0823 0.25 -2.5
961,664 - PP_0823 0.27 -1.7
961,664 - PP_0823 0.27 -0.6
961,664 - PP_0823 0.27 -0.3
961,895 - PP_0823 0.50 -1.2
961,895 - PP_0823 0.50 +0.5
961,943 + PP_0823 0.54 -1.1
962,140 + PP_0823 0.73 -0.3
962,140 + PP_0823 0.73 -1.8
962,140 + PP_0823 0.73 -0.8
962,140 + PP_0823 0.73 -1.1
962,140 + PP_0823 0.73 -0.8
962,140 + PP_0823 0.73 -0.3
962,140 + PP_0823 0.73 +0.8
962,140 + PP_0823 0.73 -1.6
962,140 + PP_0823 0.73 -0.9
962,141 - PP_0823 0.74 -2.3
962,141 - PP_0823 0.74 -0.6
962,141 - PP_0823 0.74 -2.2
962,141 - PP_0823 0.74 +0.5
962,141 - PP_0823 0.74 -1.2
962,141 - PP_0823 0.74 -0.7
962,141 - PP_0823 0.74 -0.1
962,141 - PP_0823 0.74 -1.2
962,141 - PP_0823 0.74 +0.6
962,141 - PP_0823 0.74 -1.5
962,185 + PP_0823 0.78 -0.7
962,386 + -1.3
962,387 - -1.4
962,414 + +0.6
962,414 + -1.1
962,450 - +2.4
962,450 - -0.0
962,466 - -1.0
962,480 + +0.3
962,481 - -2.2
962,481 - -1.1
962,483 - +0.2
962,483 - -0.3
962,725 + PP_0824 0.22 +0.4
962,725 + PP_0824 0.22 -0.3
962,849 - PP_0824 0.36 +0.9
962,849 - PP_0824 0.36 -1.4
962,986 - PP_0824 0.52 +0.4
963,008 + PP_0824 0.55 +0.6
963,009 - PP_0824 0.55 +0.3
963,024 + PP_0824 0.56 +0.4
963,025 - PP_0824 0.57 -0.5
963,189 + PP_0824 0.76 +0.5
963,190 - PP_0824 0.76 -1.2
963,199 - PP_0824 0.77 +1.6
963,290 + PP_0824 0.88 +0.4
963,291 - PP_0824 0.88 +0.6
963,348 + +0.5
963,348 + -0.4
963,348 + +0.0
963,348 + -2.8
963,349 - +1.2
963,349 - -1.5
963,349 - -1.3
963,349 - -0.7

Or see this region's nucleotide sequence