Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5458 and PP_0800 are separated by 190 nucleotides PP_0800 and PP_0801 overlap by 22 nucleotides PP_0801 and PP_0802 are separated by 88 nucleotides
PP_5458: PP_5458 - conserved exported protein of unknown function, at 919,305 to 919,529
_5458
PP_0800: PP_0800 - conserved protein of unknown function, at 919,720 to 920,472
_0800
PP_0801: PP_0801 - conserved exported protein of unknown function, at 920,451 to 920,762
_0801
PP_0802: PP_0802 - putative chemotaxis protein, at 920,851 to 921,750
_0802
Position (kb) 920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 919.518 kb on - strand at 919.518 kb on - strand at 919.537 kb on + strand at 919.559 kb on + strand at 919.559 kb on + strand at 919.559 kb on + strand at 919.575 kb on - strand at 919.581 kb on - strand at 919.581 kb on - strand at 919.688 kb on - strand at 919.739 kb on + strand at 919.739 kb on + strand at 919.739 kb on + strand at 919.740 kb on - strand at 919.846 kb on + strand, within PP_0800 at 919.846 kb on + strand, within PP_0800 at 919.847 kb on - strand, within PP_0800 at 919.889 kb on + strand, within PP_0800 at 919.890 kb on - strand, within PP_0800 at 919.890 kb on - strand, within PP_0800 at 920.156 kb on + strand, within PP_0800 at 920.156 kb on + strand, within PP_0800 at 920.156 kb on + strand, within PP_0800 at 920.156 kb on + strand, within PP_0800 at 920.156 kb on + strand, within PP_0800 at 920.156 kb on + strand, within PP_0800 at 920.157 kb on - strand, within PP_0800 at 920.157 kb on - strand, within PP_0800 at 920.157 kb on - strand, within PP_0800 at 920.157 kb on - strand, within PP_0800 at 920.335 kb on + strand, within PP_0800 at 920.335 kb on + strand, within PP_0800 at 920.407 kb on - strand at 920.428 kb on - strand at 920.440 kb on + strand at 920.440 kb on + strand at 920.440 kb on + strand at 920.440 kb on + strand at 920.441 kb on - strand at 920.441 kb on - strand at 920.507 kb on - strand, within PP_0801 at 920.801 kb on - strand at 920.847 kb on + strand at 920.847 kb on + strand at 920.847 kb on + strand at 920.848 kb on - strand at 920.848 kb on - strand at 920.848 kb on - strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.850 kb on - strand at 920.925 kb on + strand at 921.002 kb on + strand, within PP_0802 at 921.002 kb on + strand, within PP_0802 at 921.002 kb on + strand, within PP_0802 at 921.002 kb on + strand, within PP_0802 at 921.003 kb on - strand, within PP_0802 at 921.237 kb on + strand, within PP_0802 at 921.237 kb on + strand, within PP_0802 at 921.319 kb on + strand, within PP_0802 at 921.460 kb on + strand, within PP_0802 at 921.461 kb on - strand, within PP_0802 at 921.461 kb on - strand, within PP_0802 at 921.601 kb on + strand, within PP_0802 at 921.601 kb on + strand, within PP_0802 at 921.602 kb on - strand, within PP_0802 at 921.602 kb on - strand, within PP_0802
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs remove 919,518 - +0.0 919,518 - +0.8 919,537 + -1.0 919,559 + +1.1 919,559 + -1.0 919,559 + +0.2 919,575 - -0.2 919,581 - -1.0 919,581 - +1.2 919,688 - +1.6 919,739 + +0.5 919,739 + -3.0 919,739 + -1.7 919,740 - +0.6 919,846 + PP_0800 0.17 +1.8 919,846 + PP_0800 0.17 -1.2 919,847 - PP_0800 0.17 -2.0 919,889 + PP_0800 0.22 +0.1 919,890 - PP_0800 0.23 -0.2 919,890 - PP_0800 0.23 +1.0 920,156 + PP_0800 0.58 -2.1 920,156 + PP_0800 0.58 -0.1 920,156 + PP_0800 0.58 +0.7 920,156 + PP_0800 0.58 -0.1 920,156 + PP_0800 0.58 -1.7 920,156 + PP_0800 0.58 -2.7 920,157 - PP_0800 0.58 +2.1 920,157 - PP_0800 0.58 -1.6 920,157 - PP_0800 0.58 -1.3 920,157 - PP_0800 0.58 +0.9 920,335 + PP_0800 0.82 +0.5 920,335 + PP_0800 0.82 +0.1 920,407 - +0.4 920,428 - -2.9 920,440 + +0.6 920,440 + -0.7 920,440 + +0.9 920,440 + -0.4 920,441 - +1.1 920,441 - -1.8 920,507 - PP_0801 0.18 +0.9 920,801 - -1.8 920,847 + +1.5 920,847 + +0.2 920,847 + +1.2 920,848 - +0.4 920,848 - +1.3 920,848 - +0.7 920,849 + -0.0 920,849 + -0.4 920,849 + -1.3 920,849 + +0.6 920,849 + -1.0 920,849 + +0.2 920,850 - -0.5 920,925 + +2.3 921,002 + PP_0802 0.17 -0.1 921,002 + PP_0802 0.17 -0.0 921,002 + PP_0802 0.17 -0.5 921,002 + PP_0802 0.17 -0.1 921,003 - PP_0802 0.17 +0.3 921,237 + PP_0802 0.43 -1.9 921,237 + PP_0802 0.43 +0.1 921,319 + PP_0802 0.52 -0.4 921,460 + PP_0802 0.68 +1.6 921,461 - PP_0802 0.68 +1.0 921,461 - PP_0802 0.68 -1.4 921,601 + PP_0802 0.83 -2.1 921,601 + PP_0802 0.83 -0.7 921,602 - PP_0802 0.83 -1.0 921,602 - PP_0802 0.83 +0.4
Or see this region's nucleotide sequence