Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0793 and PP_0794 are separated by 0 nucleotides PP_0794 and PP_0795 overlap by 4 nucleotides
PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345
_0793
PP_0794: PP_0794 - 1-phosphofructokinase monomer, at 912,346 to 913,293
_0794
PP_0795: PP_0795 - fructose PTS permease - IIBC component, at 913,290 to 915,032
_0795
Position (kb) 912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 911.487 kb on + strand, within PP_0793 at 911.686 kb on + strand, within PP_0793 at 911.687 kb on - strand, within PP_0793 at 911.687 kb on - strand, within PP_0793 at 911.817 kb on + strand, within PP_0793 at 911.817 kb on + strand, within PP_0793 at 911.922 kb on + strand, within PP_0793 at 912.013 kb on + strand, within PP_0793 at 912.014 kb on - strand, within PP_0793 at 912.081 kb on - strand at 912.387 kb on + strand at 912.510 kb on - strand, within PP_0794 at 912.621 kb on + strand, within PP_0794 at 912.622 kb on - strand, within PP_0794 at 912.622 kb on - strand, within PP_0794 at 912.833 kb on + strand, within PP_0794 at 912.833 kb on + strand, within PP_0794 at 912.834 kb on - strand, within PP_0794 at 912.904 kb on - strand, within PP_0794 at 913.304 kb on - strand at 913.304 kb on - strand at 913.339 kb on + strand at 913.340 kb on - strand at 913.340 kb on - strand at 913.409 kb on + strand at 913.410 kb on - strand at 913.410 kb on - strand at 913.628 kb on + strand, within PP_0795 at 913.679 kb on - strand, within PP_0795 at 913.685 kb on + strand, within PP_0795 at 913.685 kb on + strand, within PP_0795 at 913.686 kb on - strand, within PP_0795 at 913.840 kb on + strand, within PP_0795 at 913.868 kb on + strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.872 kb on + strand, within PP_0795 at 913.872 kb on + strand, within PP_0795 at 913.873 kb on - strand, within PP_0795 at 914.007 kb on + strand, within PP_0795 at 914.008 kb on - strand, within PP_0795 at 914.104 kb on - strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.191 kb on - strand, within PP_0795
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs remove 911,487 + PP_0793 0.70 -2.2 911,686 + PP_0793 0.77 -0.4 911,687 - PP_0793 0.77 +1.1 911,687 - PP_0793 0.77 +0.8 911,817 + PP_0793 0.81 -1.7 911,817 + PP_0793 0.81 -1.8 911,922 + PP_0793 0.85 +1.2 912,013 + PP_0793 0.88 +0.4 912,014 - PP_0793 0.88 +0.3 912,081 - +0.7 912,387 + +0.3 912,510 - PP_0794 0.17 -1.1 912,621 + PP_0794 0.29 +1.8 912,622 - PP_0794 0.29 +0.8 912,622 - PP_0794 0.29 +1.6 912,833 + PP_0794 0.51 +1.8 912,833 + PP_0794 0.51 +3.3 912,834 - PP_0794 0.51 +1.0 912,904 - PP_0794 0.59 +1.0 913,304 - -0.2 913,304 - -0.5 913,339 + +1.9 913,340 - -0.3 913,340 - -1.5 913,409 + -0.7 913,410 - -1.3 913,410 - +0.4 913,628 + PP_0795 0.19 +1.1 913,679 - PP_0795 0.22 -0.2 913,685 + PP_0795 0.23 +0.8 913,685 + PP_0795 0.23 +0.7 913,686 - PP_0795 0.23 -1.9 913,840 + PP_0795 0.32 +0.7 913,868 + PP_0795 0.33 +0.5 913,869 - PP_0795 0.33 +0.2 913,869 - PP_0795 0.33 -0.1 913,869 - PP_0795 0.33 +0.5 913,872 + PP_0795 0.33 -0.0 913,872 + PP_0795 0.33 +0.8 913,873 - PP_0795 0.33 -0.6 914,007 + PP_0795 0.41 -0.8 914,008 - PP_0795 0.41 -1.3 914,104 - PP_0795 0.47 -0.6 914,190 + PP_0795 0.52 +0.4 914,190 + PP_0795 0.52 -3.1 914,190 + PP_0795 0.52 +0.8 914,191 - PP_0795 0.52 -1.4
Or see this region's nucleotide sequence