Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0736 and PP_0737 are separated by 104 nucleotides PP_0737 and PP_0738 are separated by 115 nucleotides PP_0738 and PP_0739 overlap by 4 nucleotides
PP_0736: PP_0736 - Glutamate racemase, at 855,150 to 855,947
_0736
PP_0737: PP_0737 - lipid A 3-O-deacylase, at 856,052 to 856,570
_0737
PP_0738: PP_0738 - conserved protein of unknown function, at 856,686 to 857,384
_0738
PP_0739: PP_0739 - deoxyribodipyrimidine photolyase, at 857,381 to 858,823
_0739
Position (kb) 856
857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 855.915 kb on - strand at 855.915 kb on - strand at 855.915 kb on - strand at 855.915 kb on - strand at 855.972 kb on + strand at 855.973 kb on - strand at 855.994 kb on - strand at 855.994 kb on - strand at 856.023 kb on + strand at 856.024 kb on - strand at 856.024 kb on - strand at 856.024 kb on - strand at 856.052 kb on - strand at 856.253 kb on + strand, within PP_0737 at 856.253 kb on + strand, within PP_0737 at 856.254 kb on - strand, within PP_0737 at 856.259 kb on + strand, within PP_0737 at 856.259 kb on + strand, within PP_0737 at 856.259 kb on + strand, within PP_0737 at 856.341 kb on + strand, within PP_0737 at 856.350 kb on - strand, within PP_0737 at 856.350 kb on - strand, within PP_0737 at 856.533 kb on + strand at 856.533 kb on + strand at 856.534 kb on - strand at 856.534 kb on - strand at 856.553 kb on + strand at 856.554 kb on - strand at 856.611 kb on + strand at 856.612 kb on - strand at 856.622 kb on + strand at 856.623 kb on - strand at 856.623 kb on - strand at 856.634 kb on + strand at 856.635 kb on - strand at 856.668 kb on + strand at 856.668 kb on + strand at 856.668 kb on + strand at 856.668 kb on + strand at 856.669 kb on - strand at 856.669 kb on - strand at 856.709 kb on + strand at 856.709 kb on + strand at 856.709 kb on + strand at 856.710 kb on - strand at 856.710 kb on - strand at 856.710 kb on - strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.713 kb on - strand at 856.852 kb on - strand, within PP_0738 at 856.889 kb on + strand, within PP_0738 at 857.113 kb on + strand, within PP_0738 at 857.113 kb on + strand, within PP_0738 at 857.114 kb on - strand, within PP_0738 at 857.358 kb on - strand at 857.369 kb on + strand at 857.378 kb on + strand at 857.390 kb on + strand at 857.462 kb on + strand at 857.462 kb on + strand at 857.462 kb on + strand at 857.462 kb on + strand at 857.463 kb on - strand at 857.463 kb on - strand at 857.463 kb on - strand at 857.463 kb on - strand at 857.463 kb on - strand at 857.474 kb on + strand at 857.474 kb on + strand at 857.474 kb on + strand at 857.475 kb on - strand at 857.478 kb on + strand at 857.479 kb on - strand at 857.485 kb on + strand at 857.486 kb on - strand at 857.489 kb on - strand at 857.509 kb on + strand at 857.509 kb on + strand at 857.546 kb on + strand, within PP_0739 at 857.628 kb on + strand, within PP_0739 at 857.628 kb on + strand, within PP_0739 at 857.628 kb on + strand, within PP_0739 at 857.971 kb on - strand, within PP_0739 at 857.988 kb on - strand, within PP_0739 at 858.118 kb on + strand, within PP_0739 at 858.119 kb on - strand, within PP_0739 at 858.260 kb on + strand, within PP_0739
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs remove 855,915 - +0.2 855,915 - -1.7 855,915 - -0.4 855,915 - -0.2 855,972 + +0.1 855,973 - +0.7 855,994 - +0.5 855,994 - +0.3 856,023 + +0.7 856,024 - +0.9 856,024 - -0.4 856,024 - +0.1 856,052 - +1.1 856,253 + PP_0737 0.39 +0.1 856,253 + PP_0737 0.39 -2.2 856,254 - PP_0737 0.39 +0.2 856,259 + PP_0737 0.40 +1.6 856,259 + PP_0737 0.40 +0.1 856,259 + PP_0737 0.40 -0.9 856,341 + PP_0737 0.56 +1.2 856,350 - PP_0737 0.57 +0.9 856,350 - PP_0737 0.57 +0.8 856,533 + -0.5 856,533 + +1.1 856,534 - +0.8 856,534 - -1.4 856,553 + +1.4 856,554 - -0.9 856,611 + -0.7 856,612 - +1.2 856,622 + +0.3 856,623 - -0.7 856,623 - +0.3 856,634 + -0.5 856,635 - +0.4 856,668 + -0.1 856,668 + +0.3 856,668 + -0.4 856,668 + +0.3 856,669 - +0.0 856,669 - -0.3 856,709 + +0.4 856,709 + -1.3 856,709 + +1.0 856,710 - -0.3 856,710 - +1.1 856,710 - -0.1 856,712 + -0.3 856,712 + -0.6 856,712 + -0.3 856,712 + +0.4 856,712 + -1.4 856,712 + +0.6 856,713 - +0.6 856,852 - PP_0738 0.24 -0.2 856,889 + PP_0738 0.29 -3.2 857,113 + PP_0738 0.61 -2.5 857,113 + PP_0738 0.61 -1.7 857,114 - PP_0738 0.61 -1.1 857,358 - -2.1 857,369 + +1.6 857,378 + -0.6 857,390 + -0.0 857,462 + +1.5 857,462 + +1.0 857,462 + -1.0 857,462 + +1.0 857,463 - +0.6 857,463 - +1.7 857,463 - +0.4 857,463 - +1.7 857,463 - -0.4 857,474 + -1.5 857,474 + -0.6 857,474 + +0.3 857,475 - -0.9 857,478 + +0.2 857,479 - +0.9 857,485 + -1.2 857,486 - -0.6 857,489 - -0.5 857,509 + -1.4 857,509 + -2.7 857,546 + PP_0739 0.11 +0.8 857,628 + PP_0739 0.17 +0.8 857,628 + PP_0739 0.17 +0.4 857,628 + PP_0739 0.17 +0.6 857,971 - PP_0739 0.41 -2.0 857,988 - PP_0739 0.42 -0.0 858,118 + PP_0739 0.51 -0.6 858,119 - PP_0739 0.51 -0.2 858,260 + PP_0739 0.61 -0.5
Or see this region's nucleotide sequence