Strain Fitness in Pseudomonas putida KT2440 around PP_0586

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0584 and PP_0585 are separated by 167 nucleotidesPP_0585 and PP_0586 overlap by 4 nucleotidesPP_0586 and PP_0587 are separated by 52 nucleotidesPP_0587 and PP_0588 are separated by 145 nucleotidesPP_0588 and PP_0589 are separated by 107 nucleotides PP_0584: PP_0584 - Methyl-accepting chemotaxis transducer, at 681,329 to 683,272 _0584 PP_0585: PP_0585 - putative metal-sensitive transcriptional regulator, MerR family, at 683,440 to 683,850 _0585 PP_0586: PP_0586 - cadmium translocating P-type ATPase, at 683,847 to 686,246 _0586 PP_0587: PP_0587 - conserved exported protein of unknown function, at 686,299 to 686,685 _0587 PP_0588: PP_0588 - putative copper-binding chaperone, at 686,831 to 687,028 _0588 PP_0589: PP_0589 - Bcr/CflA family multidrug resistance transporter, at 687,136 to 688,317 _0589 Position (kb) 683 684 685 686 687Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 682.863 kb on + strand, within PP_0584at 682.864 kb on - strand, within PP_0584at 682.929 kb on + strand, within PP_0584at 682.929 kb on + strand, within PP_0584at 682.935 kb on + strand, within PP_0584at 682.936 kb on - strand, within PP_0584at 683.005 kb on - strand, within PP_0584at 683.005 kb on - strand, within PP_0584at 683.025 kb on + strand, within PP_0584at 683.025 kb on + strand, within PP_0584at 683.025 kb on + strand, within PP_0584at 683.026 kb on - strand, within PP_0584at 683.026 kb on - strand, within PP_0584at 683.026 kb on - strand, within PP_0584at 683.026 kb on - strand, within PP_0584at 683.026 kb on - strand, within PP_0584at 683.026 kb on - strand, within PP_0584at 683.076 kb on + strand, within PP_0584at 683.076 kb on + strand, within PP_0584at 683.076 kb on + strand, within PP_0584at 683.076 kb on + strandat 683.313 kb on + strandat 683.313 kb on + strandat 683.313 kb on + strandat 683.314 kb on - strandat 683.314 kb on - strandat 683.343 kb on - strandat 683.343 kb on - strandat 683.362 kb on - strandat 683.365 kb on + strandat 683.413 kb on + strandat 683.413 kb on + strandat 683.455 kb on - strandat 683.735 kb on + strand, within PP_0585at 683.736 kb on - strand, within PP_0585at 683.792 kb on + strand, within PP_0585at 683.998 kb on + strandat 683.998 kb on + strandat 683.999 kb on - strandat 683.999 kb on - strandat 683.999 kb on - strandat 684.038 kb on - strandat 684.186 kb on - strand, within PP_0586at 684.798 kb on + strand, within PP_0586at 684.799 kb on - strand, within PP_0586at 685.145 kb on + strand, within PP_0586at 685.146 kb on - strand, within PP_0586at 685.312 kb on - strand, within PP_0586at 685.451 kb on - strand, within PP_0586at 685.464 kb on + strand, within PP_0586at 685.464 kb on + strand, within PP_0586at 685.464 kb on + strand, within PP_0586at 685.465 kb on - strand, within PP_0586at 685.465 kb on - strand, within PP_0586at 685.465 kb on - strand, within PP_0586at 685.498 kb on + strand, within PP_0586at 685.499 kb on - strand, within PP_0586at 685.499 kb on - strand, within PP_0586at 685.540 kb on + strand, within PP_0586at 685.633 kb on + strand, within PP_0586at 685.633 kb on + strand, within PP_0586at 685.634 kb on - strand, within PP_0586at 685.634 kb on - strand, within PP_0586at 685.695 kb on + strand, within PP_0586at 685.722 kb on + strand, within PP_0586at 685.722 kb on + strand, within PP_0586at 685.723 kb on - strand, within PP_0586at 685.734 kb on + strand, within PP_0586at 685.734 kb on + strand, within PP_0586at 685.735 kb on - strand, within PP_0586at 685.735 kb on - strand, within PP_0586at 685.737 kb on + strand, within PP_0586at 685.738 kb on - strand, within PP_0586at 685.849 kb on + strand, within PP_0586at 686.016 kb on + strandat 686.133 kb on + strandat 686.134 kb on - strandat 686.227 kb on + strandat 686.227 kb on + strandat 686.227 kb on + strandat 686.227 kb on + strandat 686.228 kb on - strandat 686.228 kb on - strandat 686.228 kb on - strandat 686.303 kb on + strandat 686.336 kb on + strandat 686.336 kb on + strandat 686.358 kb on - strand, within PP_0587at 686.410 kb on + strand, within PP_0587at 686.410 kb on + strand, within PP_0587at 686.411 kb on - strand, within PP_0587at 686.411 kb on - strand, within PP_0587at 686.411 kb on - strand, within PP_0587at 686.412 kb on + strandat 686.412 kb on + strand, within PP_0587at 686.412 kb on + strand, within PP_0587at 686.412 kb on + strand, within PP_0587at 686.412 kb on + strand, within PP_0587at 686.412 kb on + strand, within PP_0587at 686.413 kb on - strand, within PP_0587at 686.538 kb on - strand, within PP_0587at 686.593 kb on + strand, within PP_0587at 686.600 kb on + strand, within PP_0587at 686.601 kb on - strand, within PP_0587at 686.601 kb on - strand, within PP_0587at 686.824 kb on - strandat 686.824 kb on - strandat 686.847 kb on + strandat 686.847 kb on + strandat 686.847 kb on + strandat 686.848 kb on - strandat 687.009 kb on - strandat 687.098 kb on + strandat 687.117 kb on - strandat 687.125 kb on - strandat 687.202 kb on + strandat 687.202 kb on + strandat 687.202 kb on + strandat 687.203 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
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682,863 + PP_0584 0.79 -2.4
682,864 - PP_0584 0.79 -1.2
682,929 + PP_0584 0.82 +1.7
682,929 + PP_0584 0.82 +1.5
682,935 + PP_0584 0.83 -2.5
682,936 - PP_0584 0.83 -0.8
683,005 - PP_0584 0.86 +1.3
683,005 - PP_0584 0.86 -1.6
683,025 + PP_0584 0.87 -1.0
683,025 + PP_0584 0.87 +1.8
683,025 + PP_0584 0.87 -0.3
683,026 - PP_0584 0.87 +2.2
683,026 - PP_0584 0.87 +1.5
683,026 - PP_0584 0.87 +0.4
683,026 - PP_0584 0.87 -0.9
683,026 - PP_0584 0.87 +1.9
683,026 - PP_0584 0.87 -2.1
683,076 + PP_0584 0.90 +0.8
683,076 + PP_0584 0.90 -0.6
683,076 + PP_0584 0.90 -2.3
683,076 + +1.8
683,313 + +1.3
683,313 + +1.0
683,313 + -1.3
683,314 - -1.5
683,314 - -2.2
683,343 - +0.6
683,343 - -1.6
683,362 - -0.3
683,365 + -1.2
683,413 + +1.8
683,413 + -2.8
683,455 - +1.1
683,735 + PP_0585 0.72 -0.3
683,736 - PP_0585 0.72 -0.5
683,792 + PP_0585 0.86 -1.7
683,998 + -2.1
683,998 + -1.3
683,999 - -1.3
683,999 - -0.3
683,999 - +0.1
684,038 - -1.5
684,186 - PP_0586 0.14 -2.4
684,798 + PP_0586 0.40 -0.3
684,799 - PP_0586 0.40 -0.2
685,145 + PP_0586 0.54 -2.0
685,146 - PP_0586 0.54 -0.2
685,312 - PP_0586 0.61 +1.9
685,451 - PP_0586 0.67 +0.9
685,464 + PP_0586 0.67 +0.4
685,464 + PP_0586 0.67 -2.3
685,464 + PP_0586 0.67 -2.0
685,465 - PP_0586 0.67 +1.1
685,465 - PP_0586 0.67 +0.4
685,465 - PP_0586 0.67 -1.3
685,498 + PP_0586 0.69 -1.2
685,499 - PP_0586 0.69 +0.9
685,499 - PP_0586 0.69 -0.1
685,540 + PP_0586 0.71 +0.4
685,633 + PP_0586 0.74 +0.6
685,633 + PP_0586 0.74 -2.3
685,634 - PP_0586 0.74 -0.3
685,634 - PP_0586 0.74 -0.6
685,695 + PP_0586 0.77 +0.3
685,722 + PP_0586 0.78 -2.5
685,722 + PP_0586 0.78 -0.2
685,723 - PP_0586 0.78 -1.6
685,734 + PP_0586 0.79 -2.6
685,734 + PP_0586 0.79 -0.5
685,735 - PP_0586 0.79 +0.3
685,735 - PP_0586 0.79 -2.5
685,737 + PP_0586 0.79 +0.4
685,738 - PP_0586 0.79 +0.8
685,849 + PP_0586 0.83 +0.2
686,016 + -1.2
686,133 + -0.1
686,134 - -1.1
686,227 + +0.4
686,227 + -1.1
686,227 + +0.5
686,227 + +1.0
686,228 - -2.0
686,228 - +0.0
686,228 - +0.2
686,303 + +0.3
686,336 + +0.2
686,336 + +0.8
686,358 - PP_0587 0.15 -0.6
686,410 + PP_0587 0.29 +1.6
686,410 + PP_0587 0.29 -0.4
686,411 - PP_0587 0.29 +0.2
686,411 - PP_0587 0.29 +1.4
686,411 - PP_0587 0.29 +0.8
686,412 + +2.4
686,412 + PP_0587 0.29 +1.8
686,412 + PP_0587 0.29 +0.4
686,412 + PP_0587 0.29 +0.6
686,412 + PP_0587 0.29 -0.3
686,412 + PP_0587 0.29 +0.2
686,413 - PP_0587 0.29 -0.1
686,538 - PP_0587 0.62 +0.2
686,593 + PP_0587 0.76 +0.4
686,600 + PP_0587 0.78 +0.7
686,601 - PP_0587 0.78 -1.4
686,601 - PP_0587 0.78 +1.5
686,824 - -0.6
686,824 - -1.4
686,847 + +1.4
686,847 + -1.6
686,847 + +0.5
686,848 - +0.9
687,009 - -1.3
687,098 + -0.3
687,117 - -0.0
687,125 - -0.5
687,202 + -0.7
687,202 + +0.0
687,202 + -0.8
687,203 - +1.0

Or see this region's nucleotide sequence