Strain Fitness in Pseudomonas putida KT2440 around PP_0430

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0428 and PP_0429 are separated by 63 nucleotidesPP_0429 and PP_0430 are separated by 67 nucleotidesPP_0430 and PP_0431 are separated by 28 nucleotidesPP_0431 and PP_0432 are separated by 142 nucleotides PP_0428: PP_0428 - aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase, at 515,807 to 516,145 _0428 PP_0429: PP_0429 - Oxidoreductase, short chain dehydrogenase/reductase family, at 516,209 to 516,991 _0429 PP_0430: PP_0430 - conserved protein of unknown function, at 517,059 to 518,015 _0430 PP_0431: PP_0431 - conserved membrane protein of unknown function, at 518,044 to 518,469 _0431 PP_0432: PP_0432 - N-acetyl-gamma-glutamyl-phosphate reductase 1, at 518,612 to 519,646 _0432 Position (kb) 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 516.090 kb on + strand, within PP_0428at 516.090 kb on + strand, within PP_0428at 516.090 kb on + strand, within PP_0428at 516.090 kb on + strand, within PP_0428at 516.090 kb on + strand, within PP_0428at 516.091 kb on - strand, within PP_0428at 516.091 kb on - strand, within PP_0428at 516.091 kb on - strand, within PP_0428at 516.091 kb on - strand, within PP_0428at 516.097 kb on + strand, within PP_0428at 516.097 kb on + strand, within PP_0428at 516.097 kb on + strand, within PP_0428at 516.097 kb on + strand, within PP_0428at 516.097 kb on + strand, within PP_0428at 516.098 kb on - strand, within PP_0428at 516.098 kb on - strand, within PP_0428at 516.098 kb on - strand, within PP_0428at 516.098 kb on - strand, within PP_0428at 516.098 kb on - strand, within PP_0428at 516.134 kb on + strandat 516.135 kb on - strandat 516.135 kb on - strandat 516.181 kb on - strandat 516.210 kb on + strandat 516.210 kb on + strandat 516.520 kb on - strand, within PP_0429at 516.608 kb on + strand, within PP_0429at 516.608 kb on + strand, within PP_0429at 516.608 kb on + strand, within PP_0429at 516.609 kb on - strand, within PP_0429at 516.714 kb on + strand, within PP_0429at 516.714 kb on + strand, within PP_0429at 516.714 kb on + strand, within PP_0429at 516.714 kb on + strand, within PP_0429at 516.714 kb on + strand, within PP_0429at 516.715 kb on - strand, within PP_0429at 516.715 kb on - strand, within PP_0429at 516.715 kb on - strand, within PP_0429at 516.715 kb on - strand, within PP_0429at 516.776 kb on + strand, within PP_0429at 516.777 kb on - strand, within PP_0429at 516.777 kb on - strand, within PP_0429at 517.022 kb on + strandat 517.022 kb on + strandat 517.023 kb on - strandat 517.027 kb on + strandat 517.027 kb on + strandat 517.028 kb on - strandat 517.028 kb on - strandat 517.028 kb on - strandat 517.028 kb on - strandat 517.060 kb on + strandat 517.188 kb on + strand, within PP_0430at 517.188 kb on + strand, within PP_0430at 517.188 kb on + strand, within PP_0430at 517.189 kb on - strand, within PP_0430at 517.189 kb on - strand, within PP_0430at 517.189 kb on - strand, within PP_0430at 517.189 kb on - strand, within PP_0430at 517.426 kb on + strand, within PP_0430at 517.426 kb on + strand, within PP_0430at 517.426 kb on + strand, within PP_0430at 517.427 kb on - strand, within PP_0430at 517.427 kb on - strand, within PP_0430at 517.427 kb on - strand, within PP_0430at 517.427 kb on - strand, within PP_0430at 517.478 kb on + strand, within PP_0430at 517.478 kb on + strand, within PP_0430at 517.479 kb on - strand, within PP_0430at 517.695 kb on + strand, within PP_0430at 517.695 kb on + strand, within PP_0430at 517.695 kb on + strand, within PP_0430at 517.696 kb on - strand, within PP_0430at 517.696 kb on - strand, within PP_0430at 517.726 kb on - strand, within PP_0430at 517.726 kb on - strand, within PP_0430at 517.726 kb on - strand, within PP_0430at 517.801 kb on + strand, within PP_0430at 518.007 kb on + strandat 518.008 kb on - strandat 518.008 kb on - strandat 518.041 kb on - strandat 518.041 kb on - strandat 518.489 kb on - strandat 518.505 kb on + strandat 518.505 kb on + strandat 518.505 kb on + strandat 518.505 kb on + strandat 518.506 kb on - strandat 518.506 kb on - strandat 518.506 kb on - strandat 518.508 kb on + strandat 518.508 kb on + strandat 518.508 kb on + strandat 518.509 kb on - strandat 518.509 kb on - strandat 518.509 kb on - strandat 518.546 kb on + strandat 518.547 kb on - strandat 518.566 kb on - strandat 518.568 kb on + strandat 518.569 kb on - strandat 518.598 kb on - strandat 518.611 kb on + strandat 518.747 kb on + strand, within PP_0432at 518.747 kb on + strand, within PP_0432at 518.748 kb on - strand, within PP_0432at 518.768 kb on + strand, within PP_0432at 518.768 kb on + strand, within PP_0432at 518.951 kb on + strand, within PP_0432at 518.996 kb on + strand, within PP_0432at 518.997 kb on - strand, within PP_0432at 518.997 kb on - strand, within PP_0432at 518.997 kb on - strand, within PP_0432

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
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516,090 + PP_0428 0.83 +0.0
516,090 + PP_0428 0.83 -2.6
516,090 + PP_0428 0.83 -1.6
516,090 + PP_0428 0.83 +0.6
516,090 + PP_0428 0.83 +1.4
516,091 - PP_0428 0.84 +0.8
516,091 - PP_0428 0.84 +0.9
516,091 - PP_0428 0.84 +0.3
516,091 - PP_0428 0.84 -0.2
516,097 + PP_0428 0.86 -0.2
516,097 + PP_0428 0.86 +1.2
516,097 + PP_0428 0.86 +1.4
516,097 + PP_0428 0.86 -2.5
516,097 + PP_0428 0.86 +1.3
516,098 - PP_0428 0.86 +1.4
516,098 - PP_0428 0.86 -0.2
516,098 - PP_0428 0.86 -0.6
516,098 - PP_0428 0.86 +0.0
516,098 - PP_0428 0.86 +1.7
516,134 + +0.2
516,135 - +1.0
516,135 - +0.9
516,181 - +2.3
516,210 + -1.0
516,210 + +1.4
516,520 - PP_0429 0.40 +1.0
516,608 + PP_0429 0.51 +1.4
516,608 + PP_0429 0.51 +0.2
516,608 + PP_0429 0.51 +0.9
516,609 - PP_0429 0.51 +0.9
516,714 + PP_0429 0.64 -1.3
516,714 + PP_0429 0.64 -1.7
516,714 + PP_0429 0.64 +0.9
516,714 + PP_0429 0.64 +0.8
516,714 + PP_0429 0.64 -1.7
516,715 - PP_0429 0.65 +0.3
516,715 - PP_0429 0.65 -3.0
516,715 - PP_0429 0.65 -1.1
516,715 - PP_0429 0.65 -0.6
516,776 + PP_0429 0.72 +1.8
516,777 - PP_0429 0.73 -1.1
516,777 - PP_0429 0.73 -1.7
517,022 + +2.3
517,022 + -0.2
517,023 - +0.7
517,027 + +1.7
517,027 + +0.5
517,028 - -2.3
517,028 - +1.4
517,028 - +0.3
517,028 - -1.3
517,060 + +0.6
517,188 + PP_0430 0.13 +0.8
517,188 + PP_0430 0.13 +1.8
517,188 + PP_0430 0.13 +0.8
517,189 - PP_0430 0.14 -0.5
517,189 - PP_0430 0.14 +2.3
517,189 - PP_0430 0.14 +0.5
517,189 - PP_0430 0.14 -0.6
517,426 + PP_0430 0.38 -0.1
517,426 + PP_0430 0.38 -0.9
517,426 + PP_0430 0.38 +0.7
517,427 - PP_0430 0.38 +2.9
517,427 - PP_0430 0.38 +2.5
517,427 - PP_0430 0.38 +1.3
517,427 - PP_0430 0.38 -0.5
517,478 + PP_0430 0.44 +0.5
517,478 + PP_0430 0.44 -1.1
517,479 - PP_0430 0.44 -3.3
517,695 + PP_0430 0.66 +0.5
517,695 + PP_0430 0.66 -0.6
517,695 + PP_0430 0.66 -1.0
517,696 - PP_0430 0.67 +1.1
517,696 - PP_0430 0.67 -1.3
517,726 - PP_0430 0.70 -3.7
517,726 - PP_0430 0.70 +0.2
517,726 - PP_0430 0.70 +0.7
517,801 + PP_0430 0.78 +0.0
518,007 + +0.6
518,008 - +0.4
518,008 - -0.7
518,041 - -0.0
518,041 - -0.1
518,489 - +1.3
518,505 + +1.1
518,505 + +0.4
518,505 + -0.7
518,505 + -1.3
518,506 - -0.2
518,506 - -2.2
518,506 - -0.4
518,508 + +0.9
518,508 + +1.4
518,508 + +0.3
518,509 - -0.5
518,509 - -0.6
518,509 - +0.0
518,546 + -0.8
518,547 - -1.7
518,566 - +0.5
518,568 + +1.0
518,569 - +1.0
518,598 - +0.1
518,611 + +1.0
518,747 + PP_0432 0.13 +1.2
518,747 + PP_0432 0.13 +0.1
518,748 - PP_0432 0.13 -2.3
518,768 + PP_0432 0.15 -1.5
518,768 + PP_0432 0.15 +0.5
518,951 + PP_0432 0.33 -0.1
518,996 + PP_0432 0.37 +2.4
518,997 - PP_0432 0.37 +0.2
518,997 - PP_0432 0.37 +0.8
518,997 - PP_0432 0.37 +0.9

Or see this region's nucleotide sequence