Strain Fitness in Pseudomonas putida KT2440 around PP_0263

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0261 and PP_0262 are separated by 82 nucleotidesPP_0262 and PP_0263 overlap by 1 nucleotidesPP_0263 and PP_0264 overlap by 4 nucleotides PP_0261: PP_0261 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 315,186 to 315,986 _0261 PP_0262: PP_0262 - conserved protein of unknown function, at 316,069 to 316,524 _0262 PP_0263: PP_0263 - C4-dicarboxylate transport transcriptional regulatory protein, at 316,524 to 317,930 _0263 PP_0264: PP_0264 - Sensor histidine kinase, at 317,927 to 319,741 _0264 Position (kb) 316 317 318Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 315.550 kb on - strand, within PP_0261at 315.616 kb on + strand, within PP_0261at 315.616 kb on + strand, within PP_0261at 315.616 kb on + strand, within PP_0261at 315.617 kb on - strand, within PP_0261at 315.617 kb on - strand, within PP_0261at 315.825 kb on - strand, within PP_0261at 315.920 kb on + strandat 315.927 kb on + strandat 315.927 kb on + strandat 315.927 kb on + strandat 315.946 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.985 kb on - strandat 316.067 kb on + strandat 316.067 kb on + strandat 316.067 kb on + strandat 316.067 kb on + strandat 316.068 kb on - strandat 316.070 kb on + strandat 316.070 kb on + strandat 316.071 kb on - strandat 316.071 kb on - strandat 316.085 kb on + strandat 316.085 kb on + strandat 316.086 kb on - strandat 316.256 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.285 kb on - strand, within PP_0262at 316.285 kb on - strand, within PP_0262at 316.285 kb on - strand, within PP_0262at 316.359 kb on - strand, within PP_0262at 316.815 kb on + strand, within PP_0263at 316.815 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.974 kb on - strand, within PP_0263at 316.999 kb on + strand, within PP_0263at 316.999 kb on + strand, within PP_0263at 317.002 kb on + strand, within PP_0263at 317.003 kb on - strand, within PP_0263at 317.065 kb on - strand, within PP_0263at 317.151 kb on + strand, within PP_0263at 317.151 kb on + strand, within PP_0263at 317.152 kb on - strand, within PP_0263at 317.152 kb on - strand, within PP_0263at 317.152 kb on - strand, within PP_0263at 317.522 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.614 kb on + strand, within PP_0263at 317.615 kb on - strand, within PP_0263at 317.820 kb on + strandat 317.959 kb on + strandat 317.960 kb on - strandat 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.174 kb on + strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.175 kb on - strand, within PP_0264at 318.180 kb on + strand, within PP_0264at 318.181 kb on - strand, within PP_0264at 318.210 kb on - strand, within PP_0264at 318.275 kb on + strand, within PP_0264at 318.275 kb on + strand, within PP_0264at 318.275 kb on + strand, within PP_0264at 318.529 kb on + strand, within PP_0264at 318.567 kb on + strand, within PP_0264at 318.567 kb on + strand, within PP_0264at 318.568 kb on - strand, within PP_0264at 318.816 kb on + strand, within PP_0264at 318.816 kb on + strand, within PP_0264at 318.816 kb on + strand, within PP_0264at 318.817 kb on - strand, within PP_0264at 318.817 kb on - strand, within PP_0264at 318.860 kb on + strand, within PP_0264at 318.861 kb on - strand, within PP_0264at 318.890 kb on + strand, within PP_0264

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
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315,550 - PP_0261 0.45 -2.4
315,616 + PP_0261 0.54 -0.3
315,616 + PP_0261 0.54 -1.0
315,616 + PP_0261 0.54 -1.6
315,617 - PP_0261 0.54 -0.3
315,617 - PP_0261 0.54 -0.0
315,825 - PP_0261 0.80 -0.9
315,920 + +0.6
315,927 + -2.8
315,927 + +0.4
315,927 + -0.2
315,946 + +2.6
315,984 + +0.3
315,984 + +1.3
315,984 + -0.5
315,984 + -1.7
315,984 + -2.4
315,984 + -0.8
315,984 + -1.4
315,984 + +1.3
315,985 - +0.8
316,067 + +0.4
316,067 + +1.3
316,067 + +0.2
316,067 + +0.7
316,068 - -0.7
316,070 + -2.3
316,070 + -1.2
316,071 - +0.4
316,071 - -0.8
316,085 + +0.6
316,085 + -0.0
316,086 - -0.6
316,256 + PP_0262 0.41 +1.5
316,284 + PP_0262 0.47 +0.5
316,284 + PP_0262 0.47 -1.7
316,284 + PP_0262 0.47 +0.1
316,284 + PP_0262 0.47 +1.3
316,285 - PP_0262 0.47 +2.4
316,285 - PP_0262 0.47 -0.9
316,285 - PP_0262 0.47 +1.4
316,359 - PP_0262 0.64 +3.4
316,815 + PP_0263 0.21 -0.7
316,815 + PP_0263 0.21 +1.6
316,941 + PP_0263 0.30 -1.1
316,941 + PP_0263 0.30 +0.4
316,941 + PP_0263 0.30 +1.2
316,941 + PP_0263 0.30 -0.6
316,941 + PP_0263 0.30 -0.8
316,941 + PP_0263 0.30 -0.1
316,942 - PP_0263 0.30 -3.0
316,942 - PP_0263 0.30 -0.1
316,942 - PP_0263 0.30 -1.4
316,942 - PP_0263 0.30 +0.4
316,942 - PP_0263 0.30 +0.0
316,942 - PP_0263 0.30 +1.0
316,942 - PP_0263 0.30 -0.4
316,942 - PP_0263 0.30 -1.0
316,942 - PP_0263 0.30 -0.1
316,942 - PP_0263 0.30 -2.9
316,942 - PP_0263 0.30 -1.1
316,974 - PP_0263 0.32 +1.7
316,999 + PP_0263 0.34 -1.8
316,999 + PP_0263 0.34 +3.0
317,002 + PP_0263 0.34 -1.3
317,003 - PP_0263 0.34 -0.1
317,065 - PP_0263 0.38 +0.4
317,151 + PP_0263 0.45 +0.1
317,151 + PP_0263 0.45 -0.9
317,152 - PP_0263 0.45 -0.2
317,152 - PP_0263 0.45 +0.6
317,152 - PP_0263 0.45 -2.0
317,522 + PP_0263 0.71 -1.5
317,614 + PP_0263 0.77 +1.5
317,614 + PP_0263 0.77 -0.1
317,614 + PP_0263 0.77 +0.9
317,614 + PP_0263 0.77 -0.6
317,614 + PP_0263 0.77 -2.1
317,615 - PP_0263 0.78 +0.1
317,820 + -0.3
317,959 + -1.8
317,960 - -1.9
318,174 + PP_0264 0.14 -1.8
318,174 + PP_0264 0.14 -0.6
318,174 + PP_0264 0.14 -2.3
318,174 + PP_0264 0.14 -2.6
318,174 + PP_0264 0.14 +0.6
318,174 + PP_0264 0.14 +1.3
318,175 - PP_0264 0.14 +1.4
318,175 - PP_0264 0.14 +1.8
318,175 - PP_0264 0.14 +0.7
318,175 - PP_0264 0.14 -1.7
318,175 - PP_0264 0.14 -2.8
318,180 + PP_0264 0.14 -1.2
318,181 - PP_0264 0.14 -1.9
318,210 - PP_0264 0.16 -0.1
318,275 + PP_0264 0.19 -0.0
318,275 + PP_0264 0.19 -0.5
318,275 + PP_0264 0.19 -2.8
318,529 + PP_0264 0.33 +1.4
318,567 + PP_0264 0.35 -2.0
318,567 + PP_0264 0.35 -0.5
318,568 - PP_0264 0.35 +0.7
318,816 + PP_0264 0.49 +0.4
318,816 + PP_0264 0.49 -0.4
318,816 + PP_0264 0.49 +0.7
318,817 - PP_0264 0.49 -0.9
318,817 - PP_0264 0.49 -0.8
318,860 + PP_0264 0.51 +1.4
318,861 - PP_0264 0.51 -2.0
318,890 + PP_0264 0.53 -2.8

Or see this region's nucleotide sequence