Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5222 and PP_5223 are separated by 69 nucleotides PP_5223 and PP_5224 are separated by 146 nucleotides PP_5224 and PP_5225 are separated by 1 nucleotides PP_5225 and PP_5226 are separated by 239 nucleotides
PP_5222: PP_5222 - adenylate cyclase, at 5,956,597 to 5,959,452
_5222
PP_5223: PP_5223 - regulator of nucleotide diphosphokinase, at 5,959,522 to 5,959,932
_5223
PP_5224: PP_5224 - conserved protein of unknown function, at 5,960,079 to 5,960,303
_5224
PP_5225: PP_5225 - frataxin, at 5,960,305 to 5,960,637
_5225
PP_5226: PP_5226 - Lipoprotein, Lppl family, at 5,960,877 to 5,961,095
_5226
Position (kb) 5959
5960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5958.560 kb on + strand, within PP_5222 at 5958.605 kb on + strand, within PP_5222 at 5958.661 kb on + strand, within PP_5222 at 5958.661 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.669 kb on - strand, within PP_5222 at 5958.758 kb on - strand, within PP_5222 at 5958.781 kb on + strand, within PP_5222 at 5958.793 kb on + strand, within PP_5222 at 5958.793 kb on + strand, within PP_5222 at 5958.861 kb on + strand, within PP_5222 at 5958.861 kb on + strand, within PP_5222 at 5958.875 kb on - strand at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.920 kb on - strand, within PP_5222 at 5958.920 kb on - strand, within PP_5222 at 5958.920 kb on - strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.153 kb on + strand, within PP_5222 at 5959.153 kb on + strand, within PP_5222 at 5959.153 kb on + strand, within PP_5222 at 5959.153 kb on + strand, within PP_5222 at 5959.154 kb on - strand, within PP_5222 at 5959.154 kb on - strand, within PP_5222 at 5959.154 kb on - strand, within PP_5222 at 5959.210 kb on + strand at 5959.210 kb on + strand at 5959.258 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.320 kb on + strand at 5959.321 kb on - strand at 5959.379 kb on - strand at 5959.379 kb on - strand at 5959.387 kb on + strand at 5959.387 kb on + strand at 5959.388 kb on - strand at 5959.388 kb on - strand at 5959.523 kb on + strand at 5959.523 kb on + strand at 5959.523 kb on + strand at 5959.524 kb on - strand at 5959.532 kb on + strand at 5959.533 kb on - strand at 5959.556 kb on + strand at 5959.556 kb on + strand at 5959.557 kb on - strand at 5959.557 kb on - strand at 5959.718 kb on + strand, within PP_5223 at 5959.718 kb on + strand, within PP_5223 at 5959.719 kb on - strand, within PP_5223 at 5959.851 kb on + strand, within PP_5223 at 5959.891 kb on + strand, within PP_5223 at 5959.891 kb on + strand, within PP_5223 at 5959.891 kb on + strand, within PP_5223 at 5959.891 kb on + strand, within PP_5223 at 5959.892 kb on - strand at 5959.892 kb on - strand at 5959.892 kb on - strand at 5960.045 kb on + strand at 5960.045 kb on + strand at 5960.046 kb on - strand at 5960.062 kb on + strand at 5960.223 kb on + strand, within PP_5224 at 5960.224 kb on - strand, within PP_5224 at 5960.224 kb on - strand, within PP_5224 at 5960.224 kb on - strand, within PP_5224 at 5960.266 kb on + strand, within PP_5224 at 5960.267 kb on - strand, within PP_5224 at 5960.298 kb on - strand at 5960.353 kb on - strand, within PP_5225 at 5960.665 kb on - strand at 5960.685 kb on - strand at 5960.758 kb on - strand at 5960.758 kb on - strand at 5960.758 kb on - strand at 5960.758 kb on - strand at 5960.778 kb on + strand at 5960.779 kb on - strand at 5960.784 kb on + strand at 5960.784 kb on + strand at 5960.835 kb on + strand at 5960.836 kb on - strand at 5960.837 kb on + strand at 5960.837 kb on + strand at 5960.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs remove 5,958,560 + PP_5222 0.69 +0.3 5,958,605 + PP_5222 0.70 +1.0 5,958,661 + PP_5222 0.72 -1.3 5,958,661 + PP_5222 0.72 +0.2 5,958,668 + PP_5222 0.73 -1.4 5,958,668 + PP_5222 0.73 +0.4 5,958,668 + PP_5222 0.73 +0.7 5,958,668 + PP_5222 0.73 +0.9 5,958,668 + PP_5222 0.73 +0.3 5,958,669 - PP_5222 0.73 -0.5 5,958,758 - PP_5222 0.76 -0.3 5,958,781 + PP_5222 0.76 +0.1 5,958,793 + PP_5222 0.77 +0.5 5,958,793 + PP_5222 0.77 +0.3 5,958,861 + PP_5222 0.79 +1.0 5,958,861 + PP_5222 0.79 -0.3 5,958,875 - -0.6 5,958,904 + PP_5222 0.81 -0.1 5,958,904 + PP_5222 0.81 +0.8 5,958,904 + PP_5222 0.81 -0.2 5,958,904 + PP_5222 0.81 +0.2 5,958,904 + PP_5222 0.81 -0.3 5,958,904 + PP_5222 0.81 -0.6 5,958,904 + PP_5222 0.81 +0.2 5,958,904 + PP_5222 0.81 -0.1 5,958,905 - PP_5222 0.81 +0.3 5,958,905 - PP_5222 0.81 +1.1 5,958,905 - PP_5222 0.81 +1.0 5,958,905 - PP_5222 0.81 +0.2 5,958,905 - PP_5222 0.81 +2.4 5,958,905 - PP_5222 0.81 -0.3 5,958,905 - PP_5222 0.81 +0.1 5,958,919 + PP_5222 0.81 -0.7 5,958,919 + PP_5222 0.81 -0.5 5,958,919 + PP_5222 0.81 -0.3 5,958,919 + PP_5222 0.81 +0.7 5,958,919 + PP_5222 0.81 -0.8 5,958,920 - PP_5222 0.81 -0.8 5,958,920 - PP_5222 0.81 -0.0 5,958,920 - PP_5222 0.81 +0.6 5,959,150 + PP_5222 0.89 +0.5 5,959,150 + PP_5222 0.89 -0.3 5,959,150 + PP_5222 0.89 +0.3 5,959,150 + PP_5222 0.89 +0.9 5,959,150 + PP_5222 0.89 -0.1 5,959,150 + PP_5222 0.89 -2.2 5,959,151 - PP_5222 0.89 +0.3 5,959,151 - PP_5222 0.89 -0.7 5,959,151 - PP_5222 0.89 -0.4 5,959,151 - PP_5222 0.89 -0.0 5,959,151 - PP_5222 0.89 -0.6 5,959,153 + PP_5222 0.89 +1.6 5,959,153 + PP_5222 0.89 +1.0 5,959,153 + PP_5222 0.89 -1.1 5,959,153 + PP_5222 0.89 -0.1 5,959,154 - PP_5222 0.90 +0.5 5,959,154 - PP_5222 0.90 -1.5 5,959,154 - PP_5222 0.90 +1.0 5,959,210 + -0.4 5,959,210 + -0.3 5,959,258 + -0.6 5,959,318 + -0.9 5,959,318 + +0.2 5,959,318 + +0.1 5,959,318 + +0.5 5,959,318 + -0.6 5,959,318 + -2.0 5,959,318 + +0.3 5,959,318 + +0.1 5,959,319 - -1.5 5,959,319 - +0.6 5,959,319 - -0.4 5,959,319 - +0.3 5,959,319 - +0.1 5,959,319 - +0.7 5,959,319 - +0.0 5,959,320 + -1.0 5,959,321 - -0.4 5,959,379 - -0.1 5,959,379 - -0.1 5,959,387 + -0.2 5,959,387 + -0.7 5,959,388 - +0.7 5,959,388 - +0.2 5,959,523 + -0.5 5,959,523 + +0.8 5,959,523 + +0.2 5,959,524 - -2.9 5,959,532 + -0.3 5,959,533 - +0.4 5,959,556 + +0.1 5,959,556 + +0.2 5,959,557 - +0.9 5,959,557 - -0.5 5,959,718 + PP_5223 0.48 +1.1 5,959,718 + PP_5223 0.48 +0.2 5,959,719 - PP_5223 0.48 +0.8 5,959,851 + PP_5223 0.80 -0.2 5,959,891 + PP_5223 0.90 +0.5 5,959,891 + PP_5223 0.90 +0.9 5,959,891 + PP_5223 0.90 +0.2 5,959,891 + PP_5223 0.90 -0.5 5,959,892 - +0.4 5,959,892 - -0.0 5,959,892 - -0.1 5,960,045 + +0.8 5,960,045 + +0.2 5,960,046 - -0.2 5,960,062 + -0.9 5,960,223 + PP_5224 0.64 -1.4 5,960,224 - PP_5224 0.64 +1.4 5,960,224 - PP_5224 0.64 +0.3 5,960,224 - PP_5224 0.64 -0.5 5,960,266 + PP_5224 0.83 +0.3 5,960,267 - PP_5224 0.84 +1.3 5,960,298 - -0.1 5,960,353 - PP_5225 0.14 -0.5 5,960,665 - -0.6 5,960,685 - -0.5 5,960,758 - +0.2 5,960,758 - +0.6 5,960,758 - -0.3 5,960,758 - +0.5 5,960,778 + -1.6 5,960,779 - -2.4 5,960,784 + -1.7 5,960,784 + -0.2 5,960,835 + +0.2 5,960,836 - +3.2 5,960,837 + +1.5 5,960,837 + -0.7 5,960,837 + -0.8
Or see this region's nucleotide sequence