Strain Fitness in Pseudomonas putida KT2440 around PP_4378

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
4,967,199	+		PP_4376	0.65	-1.7
4,967,255	+		PP_4376	0.69	-0.5
4,967,256	-		PP_4376	0.69	-1.3
4,967,301	+		PP_4376	0.72	+0.9
4,967,301	+		PP_4376	0.72	-2.9
4,967,302	-		PP_4376	0.72	-1.5
4,967,309	-		PP_4376	0.73	-1.3
4,967,387	+		PP_4376	0.79	-2.1
4,967,392	-		PP_4376	0.79	-1.9
4,967,478	+		PP_4376	0.85	-1.6
4,967,478	+		PP_4376	0.85	-2.7
4,967,478	+		PP_4376	0.85	-3.1
4,967,479	-		PP_4376	0.85	-3.7
4,967,479	-		PP_4376	0.85	-1.5
4,967,479	-		PP_4376	0.85	-1.5
4,967,479	-		PP_4376	0.85	-1.2
4,967,479	-		PP_4376	0.85	-1.3
4,967,509	-		PP_4376	0.88	-1.1
4,967,523	+		PP_4376	0.89	+0.0
4,967,523	+		PP_4376	0.89	-0.5
4,967,523	+		PP_4376	0.89	-1.5
4,967,524	-		PP_4376	0.89	-1.3
4,967,524	-		PP_4376	0.89	-1.5
4,967,524	-		PP_4376	0.89	-0.5
4,967,556	+				-1.6
4,967,556	+				-0.9
4,967,556	+				-3.2
4,967,556	+				+0.5
4,967,557	-				-1.9
4,967,571	+				-1.9
4,967,653	-				-3.3
4,967,667	+				-0.4
4,967,682	+				-2.1
4,967,682	+				-1.9
4,967,683	-				-2.6
4,967,683	-				-1.9
4,967,683	-				-1.1
4,967,683	-				-1.0
4,967,683	-				-1.6
4,967,683	-				-0.7
4,967,685	-				-1.1
4,967,685	-				-0.9
4,967,685	-				-2.8
4,967,761	+				-1.4
4,967,762	-				-0.6
4,967,778	+				-2.0
4,967,938	-		PP_4377	0.52	+0.9
4,967,938	-		PP_4377	0.52	-0.9
4,967,941	+		PP_4377	0.52	-1.2
4,967,941	+		PP_4377	0.52	-1.1
4,967,941	+		PP_4377	0.52	-1.2
4,967,942	-		PP_4377	0.53	-1.8
4,967,949	+		PP_4377	0.55	+1.3
4,967,950	-		PP_4377	0.55	-0.9
4,967,950	-		PP_4377	0.55	-1.7
4,968,009	+		PP_4377	0.72	-1.7
4,968,098	+				+1.3
4,968,099	-				-2.7
4,968,099	-				+2.2
4,968,099	-				+0.2
4,968,099	-				+0.8
4,968,118	+				-0.9
4,968,140	-				-0.9
4,968,140	-				+0.7
4,968,140	-				-0.3
4,968,308	-				-2.9
4,968,314	-				-2.2
4,968,491	-		PP_4378	0.15	-1.8
4,968,491	-		PP_4378	0.15	-3.3
4,968,491	-		PP_4378	0.15	-1.7
4,968,682	+		PP_4378	0.24	-2.5
4,968,683	-		PP_4378	0.24	-1.1
4,968,683	-		PP_4378	0.24	-3.5
4,968,683	-		PP_4378	0.24	-0.5
4,968,687	-		PP_4378	0.25	-3.2
4,968,716	+		PP_4378	0.26	-0.7
4,968,717	-		PP_4378	0.26	-2.0
4,968,717	-		PP_4378	0.26	-1.1
4,968,739	+		PP_4378	0.27	-1.3
4,968,740	-		PP_4378	0.27	-3.2
4,968,740	-		PP_4378	0.27	-1.9
4,968,875	-		PP_4378	0.34	-1.3
4,968,991	+		PP_4378	0.39	-1.7
4,968,991	+		PP_4378	0.39	-1.0
4,968,991	+		PP_4378	0.39	-2.3
4,968,992	-		PP_4378	0.39	-4.1
4,969,087	+		PP_4378	0.44	-2.1
4,969,096	+		PP_4378	0.44	-2.7
4,969,096	+		PP_4378	0.44	-1.9
4,969,104	-		PP_4378	0.45	-1.5
4,969,166	+		PP_4378	0.48	-1.6
4,969,167	-		PP_4378	0.48	-2.2
4,969,167	-		PP_4378	0.48	-1.0
4,969,193	-		PP_4378	0.49	-1.7
4,969,214	+		PP_4378	0.50	-2.1
4,969,247	-		PP_4378	0.52	-1.2
4,969,247	-		PP_4378	0.52	+0.4
4,969,286	+		PP_4378	0.54	-1.3
4,969,286	+		PP_4378	0.54	-3.2
4,969,286	+		PP_4378	0.54	-2.0
4,969,287	-		PP_4378	0.54	-3.0
4,969,287	-		PP_4378	0.54	-1.7
4,969,287	-		PP_4378	0.54	-3.7
4,969,287	-		PP_4378	0.54	-1.0
4,969,460	-		PP_4378	0.62	-1.0
4,969,466	-		PP_4378	0.62	-1.3
4,969,480	+		PP_4378	0.63	-1.4
4,969,481	-		PP_4378	0.63	-0.6
4,969,481	-		PP_4378	0.63	-1.2
4,969,481	-		PP_4378	0.63	-1.0
4,969,540	+		PP_4378	0.66	-1.3
4,969,562	-		PP_4378	0.67	-1.7
4,969,589	-		PP_4378	0.68	-1.9
4,969,595	+		PP_4378	0.69	-2.2
4,969,596	-		PP_4378	0.69	-3.1
4,969,613	-		PP_4378	0.69	-3.6
4,969,661	-		PP_4378	0.72	-1.7
4,969,694	-		PP_4378	0.73	-2.6
4,969,694	-		PP_4378	0.73	-2.3
4,969,694	-		PP_4378	0.73	+0.0
4,969,725	+		PP_4378	0.75	-0.8
4,969,726	-		PP_4378	0.75	-1.4
4,969,726	-		PP_4378	0.75	-0.7
4,969,861	+		PP_4378	0.81	-1.8
4,969,861	+		PP_4378	0.81	-1.3
4,969,861	+		PP_4378	0.81	-0.3
4,969,862	-		PP_4378	0.82	-1.9
4,969,862	-		PP_4378	0.82	-3.3
4,969,868	-		PP_4378	0.82	+0.2
4,969,969	+		PP_4378	0.87	-0.8
4,969,969	+		PP_4378	0.87	-2.4
4,969,969	+		PP_4378	0.87	-0.8
4,969,969	-		PP_4378	0.87	+0.4
4,969,970	-		PP_4378	0.87	-4.3
4,970,023	+		PP_4378	0.89	-0.8
4,970,024	-		PP_4378	0.89	-0.8
4,970,029	+		PP_4378	0.90	-2.6
4,970,029	+		PP_4378	0.90	-1.9
4,970,029	+		PP_4378	0.90	-0.9
4,970,029	+		PP_4378	0.90	-1.3
4,970,029	+		PP_4378	0.90	-2.5
4,970,030	-		PP_4378	0.90	-3.5
4,970,030	-		PP_4378	0.90	-3.2
4,970,030	-		PP_4378	0.90	-1.4
4,970,030	-		PP_4378	0.90	-1.5
4,970,192	+				-4.1
4,970,228	-				-1.2
4,970,228	-				-0.7
4,970,259	+				-0.8
4,970,259	+				-2.2
4,970,259	+				-2.4
4,970,259	+				-2.0
4,970,259	+				-1.6
4,970,259	+				-1.2
4,970,260	-				-2.7
4,970,260	-				-1.7
4,970,260	-				-2.0
4,970,265	+				-2.7
4,970,546	-				-0.5
4,970,546	-				+0.4
4,970,573	-				-0.2
4,970,620	+				-0.1
4,970,620	+				+0.5
4,970,761	+				-0.6
4,970,762	-		PP_4379	0.14	-2.4
4,970,762	-		PP_4379	0.14	-0.2
4,970,762	-		PP_4379	0.14	-2.0
4,971,202	-		PP_4379	0.61	+1.2
4,971,202	-		PP_4379	0.61	-1.4
4,971,210	+		PP_4379	0.62	+0.0
4,971,210	+		PP_4379	0.62	-2.3
4,971,211	-		PP_4379	0.62	+0.2
4,971,211	-		PP_4379	0.62	+0.6
4,971,211	-		PP_4379	0.62	-1.7
4,971,216	+		PP_4379	0.62	-1.6
4,971,216	+		PP_4379	0.62	-1.0
4,971,216	+		PP_4379	0.62	-0.4
4,971,217	-		PP_4379	0.62	+0.2
4,971,217	-		PP_4379	0.62	-2.0