Strain Fitness in Pseudomonas putida KT2440 around PP_1794

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
2,013,166	+		PP_1793	0.67	+0.1
2,013,166	-		PP_1793	0.67	+0.8
2,013,167	-		PP_1793	0.67	-0.7
2,013,167	-		PP_1793	0.67	-0.4
2,013,207	-		PP_1793	0.69	+1.2
2,013,266	+		PP_1793	0.71	+1.1
2,013,266	+		PP_1793	0.71	+0.3
2,013,266	+		PP_1793	0.71	-0.5
2,013,266	+		PP_1793	0.71	-0.5
2,013,266	+		PP_1793	0.71	+0.1
2,013,267	-		PP_1793	0.71	+0.6
2,013,267	-		PP_1793	0.71	+0.2
2,013,267	-		PP_1793	0.71	+0.3
2,013,312	-		PP_1793	0.73	+0.1
2,013,312	-		PP_1793	0.73	-0.3
2,013,312	-		PP_1793	0.73	+1.2
2,013,438	+		PP_1793	0.77	-0.5
2,013,452	+		PP_1793	0.78	-1.3
2,013,453	-		PP_1793	0.78	+0.3
2,013,453	-		PP_1793	0.78	-0.0
2,013,453	-		PP_1793	0.78	+0.1
2,013,453	-		PP_1793	0.78	-0.2
2,013,453	-		PP_1793	0.78	+2.1
2,013,453	-		PP_1793	0.78	-1.3
2,013,457	+		PP_1793	0.78	+0.5
2,013,458	-		PP_1793	0.78	-0.0
2,013,458	-		PP_1793	0.78	-0.0
2,013,503	+		PP_1793	0.80	-0.6
2,013,580	+		PP_1793	0.83	-0.3
2,013,601	+		PP_1793	0.84	+0.6
2,013,602	-		PP_1793	0.84	-0.9
2,013,602	-		PP_1793	0.84	+1.0
2,013,624	-		PP_1793	0.85	+0.7
2,013,649	-		PP_1793	0.86	+0.4
2,013,695	+		PP_1793	0.87	-1.7
2,013,695	+		PP_1793	0.87	+0.3
2,013,696	-		PP_1793	0.87	+1.0
2,013,767	-				+0.0
2,013,779	+				+1.1
2,013,800	+				+0.0
2,013,800	+				+0.3
2,013,800	+				+0.3
2,013,848	+				+1.0
2,013,848	+				+1.0
2,013,861	+				+0.7
2,013,862	-				+0.3
2,013,862	-				+2.4
2,013,937	+				-0.1
2,013,937	+				+0.3
2,013,937	+				+0.5
2,013,937	+				+0.3
2,013,938	-				-0.1
2,013,938	-				-0.4
2,013,938	-				+0.2
2,013,938	-				+0.9
2,013,938	-				+0.7
2,013,998	-				+0.2
2,013,998	-				+0.7
2,014,010	-				+0.4
2,014,021	+				+1.1
2,014,021	+				+1.1
2,014,021	+				+1.5
2,014,021	+				-1.0
2,014,021	+				-0.0
2,014,021	+				+0.5
2,014,021	+				-0.3
2,014,022	-				-0.9
2,014,022	-				-0.8
2,014,022	-				+1.2
2,014,022	-				-0.7
2,014,022	-				-1.6
2,014,022	-				+0.0
2,014,031	+				-1.5
2,014,042	+				-0.3
2,014,042	+				+0.1
2,014,042	+				+0.0
2,014,042	+				+1.4
2,014,042	+				+1.2
2,014,063	+				+0.5
2,014,063	+				+0.0
2,014,063	+				+2.9
2,014,064	-				-0.7
2,014,064	-				-0.7
2,014,188	+				+1.6
2,014,189	-				+0.6
2,014,262	-		PP_1794	0.15	-0.7
2,014,262	-		PP_1794	0.15	+0.8
2,014,262	-		PP_1794	0.15	+0.2
2,014,365	-		PP_1794	0.22	+0.8
2,014,438	+		PP_1794	0.27	-1.8
2,014,438	+		PP_1794	0.27	+0.5
2,014,438	+		PP_1794	0.27	+3.4
2,014,438	+		PP_1794	0.27	+1.7
2,014,529	+		PP_1794	0.34	+1.0
2,014,530	-		PP_1794	0.34	-0.3
2,014,530	-		PP_1794	0.34	+0.1
2,014,557	+		PP_1794	0.35	+0.0
2,014,557	+		PP_1794	0.35	+0.7
2,014,558	-		PP_1794	0.36	+0.1
2,014,558	-		PP_1794	0.36	+0.2
2,014,629	-		PP_1794	0.40	+0.3
2,014,660	+		PP_1794	0.43	+0.9
2,014,686	-		PP_1794	0.44	+0.3
2,014,686	-		PP_1794	0.44	+0.0
2,014,841	+		PP_1794	0.55	+0.5
2,014,842	-		PP_1794	0.55	+0.5
2,014,842	-		PP_1794	0.55	+1.4
2,014,842	-		PP_1794	0.55	+0.3
2,015,092	-		PP_1794	0.73	+0.7
2,015,092	-		PP_1794	0.73	+0.4
2,015,095	+		PP_1794	0.73	+0.8
2,015,095	+		PP_1794	0.73	+0.9
2,015,095	+		PP_1794	0.73	+0.3
2,015,095	+		PP_1794	0.73	-0.4
2,015,095	+		PP_1794	0.73	-0.1
2,015,096	-		PP_1794	0.73	-0.3
2,015,172	+		PP_1794	0.78	-0.6
2,015,173	-		PP_1794	0.78	+1.8
2,015,189	-		PP_1794	0.79	-0.1
2,015,189	-		PP_1794	0.79	+0.3
2,015,216	+		PP_1794	0.81	+1.1
2,015,217	-		PP_1794	0.81	+0.1
2,015,217	-		PP_1794	0.81	+1.2
2,015,217	-		PP_1794	0.81	+0.3
2,015,217	-		PP_1794	0.81	+0.5
2,015,290	-		PP_1794	0.86	+1.9
2,015,290	-		PP_1794	0.86	+0.9
2,015,368	+				-0.1
2,015,369	-				+2.0
2,015,373	+				+1.7
2,015,397	+				-0.5
2,015,397	+				-0.4
2,015,397	+				+0.3
2,015,398	-				+0.4
2,015,398	-				-0.1
2,015,475	+				-0.7
2,015,480	+				+0.0
2,015,480	+				+1.4
2,015,480	+				-0.3
2,015,481	-				-0.1
2,015,492	+				+0.1
2,015,493	-				-0.1
2,015,528	+				+0.1
2,015,529	-				+1.1
2,015,529	-				-0.8
2,015,529	-				-0.1
2,015,567	+				+0.9
2,015,567	+				-1.0
2,015,592	-				+0.3
2,015,716	+		PP_1795	0.24	+0.7
2,015,716	+		PP_1795	0.24	+0.2
2,015,716	+		PP_1795	0.24	-0.2
2,015,717	-		PP_1795	0.24	+0.9
2,015,717	-		PP_1795	0.24	+0.4
2,015,717	-		PP_1795	0.24	+1.1
2,015,736	+		PP_1795	0.26	+0.3
2,015,737	-		PP_1795	0.26	+0.9
2,015,744	+		PP_1795	0.27	+0.4
2,015,745	-		PP_1795	0.27	+1.0
2,015,844	-		PP_1795	0.38	-0.2
2,015,846	-		PP_1795	0.38	+0.9
2,015,846	-		PP_1795	0.38	+1.0
2,015,846	-		PP_1795	0.38	+0.5
2,015,846	-		PP_1795	0.38	+1.0
2,015,846	-		PP_1795	0.38	+1.1
2,015,975	+		PP_1795	0.53	+0.6
2,015,976	-		PP_1795	0.53	-0.9
2,016,012	-		PP_1795	0.57	+0.1
2,016,047	-		PP_1795	0.61	+0.2
2,016,106	-		PP_1795	0.68	+1.0
2,016,106	-		PP_1795	0.68	+0.9
2,016,106	-		PP_1795	0.68	+0.5
2,016,122	+		PP_1795	0.69	+0.2
2,016,122	+		PP_1795	0.69	+0.7
2,016,123	-		PP_1795	0.70	+0.0
2,016,123	-		PP_1795	0.70	+1.8
2,016,123	-		PP_1795	0.70	+0.5
2,016,123	-		PP_1795	0.70	+0.0
2,016,123	-		PP_1795	0.70	+0.8
2,016,123	-		PP_1795	0.70	-0.4
2,016,123	-		PP_1795	0.70	+1.3
2,016,123	-		PP_1795	0.70	+0.6
2,016,123	-		PP_1795	0.70	+4.0
2,016,127	+		PP_1795	0.70	+0.6
2,016,127	+		PP_1795	0.70	+0.9
2,016,127	+		PP_1795	0.70	+0.9
2,016,128	-		PP_1795	0.70	+0.8
2,016,128	-		PP_1795	0.70	+0.5
2,016,128	-		PP_1795	0.70	+1.2
2,016,276	+		PP_1795	0.87	+1.3
2,016,319	+				+0.4
2,016,319	+				+0.5
2,016,319	+				+1.0
2,016,319	+				-0.7
2,016,320	-				-0.1
2,016,320	-				+0.1
2,016,320	-				+0.8
2,016,320	-				+0.1
2,016,320	-				+0.1
2,016,320	-				-0.0
2,016,320	-				-0.1
2,016,386	+				+0.9
2,016,386	+				+0.4
2,016,386	+				-0.3
2,016,386	+				+0.6
2,016,386	+				+0.2
2,016,386	+				-0.4
2,016,386	+				+1.4
2,016,387	-				+0.3
2,016,401	+				-0.1
2,016,401	+				-0.2
2,016,402	-				+0.8
2,016,413	-				-1.8
2,016,429	+				+0.0
2,016,430	-				+0.5
2,016,430	-				+0.5
2,016,434	-				+0.9
2,016,434	-				+0.1
2,016,434	-				-0.1
2,016,434	-				-0.0