Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0878 and PP_0879 overlap by 1 nucleotides PP_0879 and PP_0880 are separated by 10 nucleotides PP_0880 and PP_0881 are separated by 10 nucleotides
PP_0878: PP_0878 - dipeptide ABC transporter, binding subunit, at 1,018,092 to 1,019,060
_0878
PP_0879: PP_0879 - dipeptide ABC transporter - putative ATP binding subunit, at 1,019,060 to 1,020,028
_0879
PP_0880: PP_0880 - dipeptide ABC transporter - putative membrane subunit, at 1,020,039 to 1,020,965
_0880
PP_0881: PP_0881 - dipeptide ABC transporter - putative membrane subunit, at 1,020,976 to 1,021,986
_0881
Position (kb) 1020
1021 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1019.153 kb on + strand at 1019.154 kb on - strand at 1019.157 kb on + strand, within PP_0879 at 1019.157 kb on + strand, within PP_0879 at 1019.286 kb on + strand, within PP_0879 at 1019.349 kb on + strand, within PP_0879 at 1019.349 kb on + strand, within PP_0879 at 1019.349 kb on + strand, within PP_0879 at 1019.350 kb on - strand, within PP_0879 at 1019.350 kb on - strand, within PP_0879 at 1019.708 kb on + strand, within PP_0879 at 1019.716 kb on - strand, within PP_0879 at 1019.809 kb on + strand, within PP_0879 at 1019.809 kb on + strand, within PP_0879 at 1019.810 kb on - strand, within PP_0879 at 1019.810 kb on - strand, within PP_0879 at 1019.810 kb on - strand, within PP_0879 at 1019.963 kb on + strand at 1019.963 kb on + strand at 1020.141 kb on + strand, within PP_0880 at 1020.141 kb on + strand, within PP_0880 at 1020.141 kb on + strand, within PP_0880 at 1020.142 kb on - strand, within PP_0880 at 1020.166 kb on + strand, within PP_0880 at 1020.421 kb on + strand, within PP_0880 at 1020.421 kb on + strand, within PP_0880 at 1020.905 kb on - strand at 1020.905 kb on - strand at 1020.960 kb on - strand at 1020.960 kb on - strand at 1021.013 kb on + strand at 1021.289 kb on + strand, within PP_0881 at 1021.290 kb on - strand, within PP_0881 at 1021.304 kb on - strand, within PP_0881 at 1021.437 kb on + strand, within PP_0881 at 1021.469 kb on + strand at 1021.579 kb on + strand, within PP_0881 at 1021.579 kb on + strand, within PP_0881 at 1021.580 kb on - strand, within PP_0881 at 1021.580 kb on - strand, within PP_0881 at 1021.580 kb on - strand, within PP_0881 at 1021.631 kb on - strand, within PP_0881 at 1021.631 kb on - strand, within PP_0881 at 1021.781 kb on + strand, within PP_0881 at 1021.781 kb on + strand, within PP_0881 at 1021.782 kb on - strand, within PP_0881 at 1021.782 kb on - strand, within PP_0881 at 1021.907 kb on - strand at 1021.948 kb on + strand at 1021.948 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs remove 1,019,153 + +0.8 1,019,154 - -0.6 1,019,157 + PP_0879 0.10 -0.0 1,019,157 + PP_0879 0.10 +0.2 1,019,286 + PP_0879 0.23 -0.7 1,019,349 + PP_0879 0.30 -3.6 1,019,349 + PP_0879 0.30 +1.8 1,019,349 + PP_0879 0.30 +0.8 1,019,350 - PP_0879 0.30 -0.6 1,019,350 - PP_0879 0.30 -3.5 1,019,708 + PP_0879 0.67 -1.1 1,019,716 - PP_0879 0.68 +1.6 1,019,809 + PP_0879 0.77 -0.8 1,019,809 + PP_0879 0.77 +0.3 1,019,810 - PP_0879 0.77 -0.4 1,019,810 - PP_0879 0.77 -0.9 1,019,810 - PP_0879 0.77 -1.3 1,019,963 + -1.0 1,019,963 + +1.2 1,020,141 + PP_0880 0.11 +1.6 1,020,141 + PP_0880 0.11 +0.4 1,020,141 + PP_0880 0.11 -0.1 1,020,142 - PP_0880 0.11 +0.7 1,020,166 + PP_0880 0.14 +1.2 1,020,421 + PP_0880 0.41 -1.1 1,020,421 + PP_0880 0.41 +0.3 1,020,905 - +0.9 1,020,905 - -1.6 1,020,960 - +1.6 1,020,960 - +0.0 1,021,013 + -0.9 1,021,289 + PP_0881 0.31 -1.1 1,021,290 - PP_0881 0.31 +0.7 1,021,304 - PP_0881 0.32 +0.4 1,021,437 + PP_0881 0.46 -0.7 1,021,469 + +0.6 1,021,579 + PP_0881 0.60 +1.0 1,021,579 + PP_0881 0.60 +0.6 1,021,580 - PP_0881 0.60 +0.6 1,021,580 - PP_0881 0.60 -2.5 1,021,580 - PP_0881 0.60 -0.4 1,021,631 - PP_0881 0.65 -0.0 1,021,631 - PP_0881 0.65 +0.6 1,021,781 + PP_0881 0.80 -1.3 1,021,781 + PP_0881 0.80 -0.5 1,021,782 - PP_0881 0.80 +0.9 1,021,782 - PP_0881 0.80 +0.8 1,021,907 - +0.1 1,021,948 + -0.4 1,021,948 + -2.6
Or see this region's nucleotide sequence