Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0774 and PP_0775 are separated by 31 nucleotides PP_0775 and PP_0776 overlap by 2 nucleotides PP_0776 and PP_0777 are separated by 145 nucleotides
PP_0774: PP_0774 - Phosphate acetyltransferase, at 891,627 to 893,714
_0774
PP_0775: PP_0775 - conserved protein of unknown function, at 893,746 to 894,048
_0775
PP_0776: PP_0776 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 894,047 to 894,532
_0776
PP_0777: PP_0777 - Glutathione peroxidase, at 894,678 to 895,160
_0777
Position (kb) 893
894
895 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 892.756 kb on + strand, within PP_0774 at 892.756 kb on + strand, within PP_0774 at 892.756 kb on + strand, within PP_0774 at 892.757 kb on - strand, within PP_0774 at 892.757 kb on - strand, within PP_0774 at 892.757 kb on - strand, within PP_0774 at 892.757 kb on - strand, within PP_0774 at 892.957 kb on - strand, within PP_0774 at 893.020 kb on + strand, within PP_0774 at 893.192 kb on + strand, within PP_0774 at 893.320 kb on - strand, within PP_0774 at 893.320 kb on - strand, within PP_0774 at 893.320 kb on - strand, within PP_0774 at 893.438 kb on - strand, within PP_0774 at 893.600 kb on + strand at 893.600 kb on + strand at 893.731 kb on - strand at 893.731 kb on - strand at 893.761 kb on - strand at 894.004 kb on + strand, within PP_0775 at 894.004 kb on + strand, within PP_0775 at 894.005 kb on - strand, within PP_0775 at 894.019 kb on + strand at 894.083 kb on + strand at 894.083 kb on + strand at 894.084 kb on - strand at 894.084 kb on - strand at 894.084 kb on - strand at 894.085 kb on + strand at 894.086 kb on - strand at 894.166 kb on + strand, within PP_0776 at 894.248 kb on + strand, within PP_0776 at 894.257 kb on + strand, within PP_0776 at 894.544 kb on - strand at 894.544 kb on - strand at 894.624 kb on + strand at 894.624 kb on + strand at 894.801 kb on + strand, within PP_0777 at 894.823 kb on - strand, within PP_0777 at 894.831 kb on + strand, within PP_0777 at 894.832 kb on - strand, within PP_0777 at 894.832 kb on - strand, within PP_0777 at 894.832 kb on - strand, within PP_0777 at 894.934 kb on - strand, within PP_0777 at 894.934 kb on - strand, within PP_0777 at 894.997 kb on - strand, within PP_0777 at 894.997 kb on - strand, within PP_0777 at 895.040 kb on + strand, within PP_0777 at 895.040 kb on + strand, within PP_0777 at 895.040 kb on + strand, within PP_0777 at 895.041 kb on - strand, within PP_0777 at 895.041 kb on - strand, within PP_0777
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs remove 892,756 + PP_0774 0.54 -0.4 892,756 + PP_0774 0.54 -0.2 892,756 + PP_0774 0.54 +0.9 892,757 - PP_0774 0.54 +1.1 892,757 - PP_0774 0.54 -0.6 892,757 - PP_0774 0.54 -0.6 892,757 - PP_0774 0.54 +0.3 892,957 - PP_0774 0.64 +0.8 893,020 + PP_0774 0.67 -0.9 893,192 + PP_0774 0.75 +1.2 893,320 - PP_0774 0.81 +0.2 893,320 - PP_0774 0.81 -0.1 893,320 - PP_0774 0.81 +0.3 893,438 - PP_0774 0.87 -0.1 893,600 + -0.9 893,600 + -0.5 893,731 - +0.8 893,731 - -2.0 893,761 - -0.1 894,004 + PP_0775 0.85 +0.2 894,004 + PP_0775 0.85 +2.4 894,005 - PP_0775 0.85 -0.6 894,019 + -0.0 894,083 + -0.2 894,083 + +0.5 894,084 - -0.1 894,084 - +0.2 894,084 - +3.9 894,085 + +2.4 894,086 - +0.0 894,166 + PP_0776 0.24 +1.9 894,248 + PP_0776 0.41 -0.8 894,257 + PP_0776 0.43 -1.1 894,544 - +3.2 894,544 - +1.4 894,624 + +1.0 894,624 + -0.4 894,801 + PP_0777 0.25 +0.1 894,823 - PP_0777 0.30 -0.3 894,831 + PP_0777 0.32 -1.9 894,832 - PP_0777 0.32 -2.3 894,832 - PP_0777 0.32 -0.7 894,832 - PP_0777 0.32 +0.6 894,934 - PP_0777 0.53 +0.0 894,934 - PP_0777 0.53 -2.2 894,997 - PP_0777 0.66 -0.1 894,997 - PP_0777 0.66 -0.5 895,040 + PP_0777 0.75 +0.2 895,040 + PP_0777 0.75 +0.2 895,040 + PP_0777 0.75 -0.6 895,041 - PP_0777 0.75 +0.5 895,041 - PP_0777 0.75 -2.3
Or see this region's nucleotide sequence