Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0589 and PP_5446 are separated by 4 nucleotides PP_5446 and PP_0590 are separated by 450 nucleotides
PP_0589: PP_0589 - Bcr/CflA family multidrug resistance transporter, at 687,136 to 688,317
_0589
PP_5446: PP_5446 - protein of unknown function, at 688,322 to 688,504
_5446
PP_0590: PP_0590 - Transcriptional regulator, ArsR family, at 688,955 to 689,668
_0590
Position (kb) 688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 687.363 kb on + strand, within PP_0589 at 687.397 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.694 kb on - strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.811 kb on - strand, within PP_0589 at 687.844 kb on + strand, within PP_0589 at 687.866 kb on - strand at 687.883 kb on - strand, within PP_0589 at 687.900 kb on + strand, within PP_0589 at 687.980 kb on - strand, within PP_0589 at 687.980 kb on - strand, within PP_0589 at 688.065 kb on + strand, within PP_0589 at 688.065 kb on + strand, within PP_0589 at 688.175 kb on + strand, within PP_0589 at 688.176 kb on - strand, within PP_0589 at 688.176 kb on - strand, within PP_0589 at 688.206 kb on - strand at 688.206 kb on - strand at 688.451 kb on + strand, within PP_5446 at 688.452 kb on - strand, within PP_5446 at 688.452 kb on - strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.502 kb on + strand at 688.502 kb on + strand at 688.503 kb on - strand at 688.503 kb on - strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.587 kb on - strand at 688.639 kb on - strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.817 kb on + strand at 688.817 kb on + strand at 688.818 kb on - strand at 688.859 kb on + strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.861 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.947 kb on - strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.973 kb on - strand at 688.973 kb on - strand at 688.973 kb on - strand at 689.071 kb on - strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.166 kb on - strand, within PP_0590 at 689.202 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.221 kb on - strand, within PP_0590 at 689.242 kb on + strand, within PP_0590 at 689.339 kb on + strand, within PP_0590 at 689.340 kb on - strand, within PP_0590 at 689.340 kb on - strand, within PP_0590 at 689.340 kb on - strand, within PP_0590 at 689.435 kb on + strand, within PP_0590 at 689.435 kb on + strand, within PP_0590 at 689.435 kb on + strand, within PP_0590 at 689.436 kb on - strand, within PP_0590
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 687,363 + PP_0589 0.19 +1.0 687,397 + PP_0589 0.22 -0.3 687,693 + PP_0589 0.47 +0.0 687,693 + PP_0589 0.47 +0.2 687,693 + PP_0589 0.47 -0.8 687,693 + PP_0589 0.47 +0.4 687,693 + PP_0589 0.47 -0.2 687,693 + PP_0589 0.47 -1.1 687,694 - PP_0589 0.47 -0.8 687,808 + PP_0589 0.57 -0.9 687,808 + PP_0589 0.57 -0.2 687,811 - PP_0589 0.57 +1.4 687,844 + PP_0589 0.60 +0.5 687,866 - -1.4 687,883 - PP_0589 0.63 -2.6 687,900 + PP_0589 0.65 -0.2 687,980 - PP_0589 0.71 +0.1 687,980 - PP_0589 0.71 +1.2 688,065 + PP_0589 0.79 +0.2 688,065 + PP_0589 0.79 -0.8 688,175 + PP_0589 0.88 -1.7 688,176 - PP_0589 0.88 -0.9 688,176 - PP_0589 0.88 -0.2 688,206 - +1.1 688,206 - -1.4 688,451 + PP_5446 0.70 +0.4 688,452 - PP_5446 0.71 +0.9 688,452 - PP_5446 0.71 -1.5 688,473 + PP_5446 0.83 -0.1 688,473 + PP_5446 0.83 +0.3 688,473 + PP_5446 0.83 +0.8 688,473 + PP_5446 0.83 +0.5 688,473 + PP_5446 0.83 -1.1 688,473 + PP_5446 0.83 +0.9 688,474 - PP_5446 0.83 -0.5 688,474 - PP_5446 0.83 +1.0 688,474 - PP_5446 0.83 +1.6 688,502 + -1.9 688,502 + -1.5 688,503 - -1.8 688,503 - +0.1 688,555 + +0.9 688,555 + +0.7 688,555 + -0.1 688,555 + +1.0 688,587 - +2.3 688,639 - +0.6 688,793 + +1.2 688,793 + +0.3 688,793 + +0.8 688,793 + -2.8 688,817 + -1.1 688,817 + -0.1 688,818 - +1.0 688,859 + -1.2 688,860 - -0.6 688,860 - -0.8 688,860 - -0.8 688,861 + +1.9 688,946 + +0.1 688,946 + +0.0 688,946 + -1.1 688,946 + +0.1 688,946 + -0.9 688,947 - +0.5 688,948 + -0.2 688,948 + -0.7 688,948 + -0.0 688,948 + +1.3 688,948 + +0.0 688,948 + +0.4 688,949 - -0.5 688,949 - +0.7 688,949 - -1.4 688,949 - -0.1 688,949 - +0.3 688,949 - +0.1 688,949 - +0.7 688,949 - -0.8 688,972 + -0.3 688,972 + +0.8 688,972 + -2.6 688,973 - +0.2 688,973 - -1.2 688,973 - +0.4 689,071 - PP_0590 0.16 +1.2 689,165 + PP_0590 0.29 -0.8 689,165 + PP_0590 0.29 -1.0 689,165 + PP_0590 0.29 +1.1 689,166 - PP_0590 0.30 +0.1 689,202 + PP_0590 0.35 -0.5 689,220 + PP_0590 0.37 +0.5 689,220 + PP_0590 0.37 +1.1 689,221 - PP_0590 0.37 -0.5 689,242 + PP_0590 0.40 +0.4 689,339 + PP_0590 0.54 -0.2 689,340 - PP_0590 0.54 -0.4 689,340 - PP_0590 0.54 -0.2 689,340 - PP_0590 0.54 -1.1 689,435 + PP_0590 0.67 -0.1 689,435 + PP_0590 0.67 -0.1 689,435 + PP_0590 0.67 +0.5 689,436 - PP_0590 0.67 -1.1
Or see this region's nucleotide sequence