Strain Fitness in Pseudomonas putida KT2440 around PP_5058

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5057 and PP_5058 are separated by 78 nucleotidesPP_5058 and PP_5059 are separated by 8 nucleotidesPP_5059 and PP_5060 are separated by 43 nucleotides PP_5057: PP_5057 - Peptidase, M23/M37 family, at 5,762,625 to 5,763,941 _5057 PP_5058: PP_5058 - Carboxy-terminal-processing protease, at 5,764,020 to 5,765,336 _5058 PP_5059: PP_5059 - conserved exported protein of unknown function, at 5,765,345 to 5,766,112 _5059 PP_5060: PP_5060 - conserved protein of unknown function, at 5,766,156 to 5,770,871 _5060 Position (kb) 5764 5765 5766Strain fitness (log2 ratio) -2 -1 0 1 2at 5763.045 kb on + strand, within PP_5057at 5763.046 kb on - strand, within PP_5057at 5763.046 kb on - strand, within PP_5057at 5763.046 kb on - strand, within PP_5057at 5763.046 kb on - strand, within PP_5057at 5763.046 kb on - strand, within PP_5057at 5763.046 kb on - strand, within PP_5057at 5763.048 kb on + strand, within PP_5057at 5763.048 kb on + strand, within PP_5057at 5763.048 kb on + strand, within PP_5057at 5763.048 kb on + strand, within PP_5057at 5763.049 kb on - strand, within PP_5057at 5763.054 kb on + strand, within PP_5057at 5763.054 kb on + strand, within PP_5057at 5763.226 kb on + strand, within PP_5057at 5763.535 kb on - strand, within PP_5057at 5763.651 kb on - strand, within PP_5057at 5763.765 kb on + strand, within PP_5057at 5763.882 kb on + strandat 5763.883 kb on - strandat 5764.210 kb on - strand, within PP_5058at 5764.210 kb on - strand, within PP_5058at 5764.223 kb on - strand, within PP_5058at 5764.265 kb on + strand, within PP_5058at 5764.265 kb on + strand, within PP_5058at 5764.266 kb on - strand, within PP_5058at 5764.291 kb on - strand, within PP_5058at 5764.363 kb on + strand, within PP_5058at 5764.363 kb on + strand, within PP_5058at 5764.363 kb on + strand, within PP_5058at 5764.391 kb on - strand, within PP_5058at 5764.625 kb on - strand, within PP_5058at 5764.638 kb on + strand, within PP_5058at 5764.644 kb on + strand, within PP_5058at 5764.645 kb on - strand, within PP_5058at 5764.912 kb on + strand, within PP_5058at 5765.076 kb on + strand, within PP_5058at 5765.079 kb on + strand, within PP_5058at 5765.079 kb on + strand, within PP_5058at 5765.079 kb on + strand, within PP_5058at 5765.079 kb on + strand, within PP_5058at 5765.080 kb on - strand, within PP_5058at 5765.080 kb on - strand, within PP_5058at 5765.080 kb on - strand, within PP_5058at 5765.344 kb on + strandat 5765.344 kb on + strandat 5765.344 kb on + strandat 5765.345 kb on - strandat 5765.345 kb on - strandat 5765.345 kb on - strandat 5765.351 kb on + strandat 5765.352 kb on - strandat 5765.352 kb on - strandat 5765.417 kb on + strandat 5765.417 kb on + strandat 5765.417 kb on + strandat 5765.417 kb on + strandat 5765.418 kb on - strandat 5765.606 kb on + strand, within PP_5059at 5765.606 kb on + strand, within PP_5059at 5765.606 kb on + strand, within PP_5059at 5765.606 kb on + strand, within PP_5059at 5765.847 kb on + strand, within PP_5059at 5765.847 kb on + strand, within PP_5059at 5765.848 kb on - strand, within PP_5059at 5765.859 kb on + strand, within PP_5059at 5765.860 kb on - strand, within PP_5059at 5765.860 kb on - strand, within PP_5059at 5765.915 kb on - strand, within PP_5059at 5765.915 kb on - strand, within PP_5059at 5766.085 kb on + strandat 5766.085 kb on + strandat 5766.193 kb on + strandat 5766.212 kb on - strandat 5766.222 kb on + strandat 5766.222 kb on + strandat 5766.223 kb on - strandat 5766.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
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5,763,045 + PP_5057 0.32 +0.2
5,763,046 - PP_5057 0.32 -0.8
5,763,046 - PP_5057 0.32 +0.8
5,763,046 - PP_5057 0.32 -1.2
5,763,046 - PP_5057 0.32 +1.2
5,763,046 - PP_5057 0.32 +2.4
5,763,046 - PP_5057 0.32 -0.4
5,763,048 + PP_5057 0.32 -0.4
5,763,048 + PP_5057 0.32 +0.5
5,763,048 + PP_5057 0.32 -1.3
5,763,048 + PP_5057 0.32 -0.7
5,763,049 - PP_5057 0.32 -0.4
5,763,054 + PP_5057 0.33 -0.4
5,763,054 + PP_5057 0.33 -0.3
5,763,226 + PP_5057 0.46 -0.7
5,763,535 - PP_5057 0.69 -1.5
5,763,651 - PP_5057 0.78 -0.1
5,763,765 + PP_5057 0.87 -0.5
5,763,882 + -1.1
5,763,883 - -2.1
5,764,210 - PP_5058 0.14 +2.4
5,764,210 - PP_5058 0.14 +0.4
5,764,223 - PP_5058 0.15 +1.7
5,764,265 + PP_5058 0.19 +2.1
5,764,265 + PP_5058 0.19 +0.8
5,764,266 - PP_5058 0.19 +0.1
5,764,291 - PP_5058 0.21 -1.5
5,764,363 + PP_5058 0.26 -0.6
5,764,363 + PP_5058 0.26 +0.4
5,764,363 + PP_5058 0.26 +0.1
5,764,391 - PP_5058 0.28 -1.3
5,764,625 - PP_5058 0.46 +1.6
5,764,638 + PP_5058 0.47 -1.1
5,764,644 + PP_5058 0.47 -1.9
5,764,645 - PP_5058 0.47 +2.0
5,764,912 + PP_5058 0.68 +1.1
5,765,076 + PP_5058 0.80 +1.4
5,765,079 + PP_5058 0.80 +1.5
5,765,079 + PP_5058 0.80 -0.6
5,765,079 + PP_5058 0.80 +1.4
5,765,079 + PP_5058 0.80 +0.9
5,765,080 - PP_5058 0.80 -0.2
5,765,080 - PP_5058 0.80 +0.5
5,765,080 - PP_5058 0.80 +1.6
5,765,344 + -0.6
5,765,344 + +0.2
5,765,344 + +1.2
5,765,345 - +0.9
5,765,345 - -0.2
5,765,345 - +0.2
5,765,351 + -1.4
5,765,352 - +0.1
5,765,352 - -0.1
5,765,417 + +0.4
5,765,417 + -0.1
5,765,417 + +1.4
5,765,417 + +1.0
5,765,418 - -0.5
5,765,606 + PP_5059 0.34 -1.0
5,765,606 + PP_5059 0.34 -0.7
5,765,606 + PP_5059 0.34 +0.1
5,765,606 + PP_5059 0.34 +0.8
5,765,847 + PP_5059 0.65 +0.5
5,765,847 + PP_5059 0.65 -0.4
5,765,848 - PP_5059 0.65 +0.3
5,765,859 + PP_5059 0.67 +0.1
5,765,860 - PP_5059 0.67 +0.3
5,765,860 - PP_5059 0.67 -0.9
5,765,915 - PP_5059 0.74 -1.4
5,765,915 - PP_5059 0.74 -0.4
5,766,085 + -0.1
5,766,085 + -0.9
5,766,193 + -0.1
5,766,212 - +0.5
5,766,222 + -0.8
5,766,222 + +0.1
5,766,223 - +0.6
5,766,223 - +0.0

Or see this region's nucleotide sequence