Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3822 and PP_3823 overlap by 4 nucleotides PP_3823 and PP_3824 are separated by 74 nucleotides PP_3824 and PP_3825 are separated by 138 nucleotides PP_3825 and PP_5633 are separated by 7 nucleotides PP_5633 and PP_3827 are separated by 51 nucleotides
PP_3822: PP_3822 - Cytochrome c family protein, at 4,350,185 to 4,351,099
_3822
PP_3823: PP_3823 - Cytochrome c-type protein, at 4,351,096 to 4,351,749
_3823
PP_3824: PP_3824 - conserved exported protein of unknown function, at 4,351,824 to 4,352,204
_3824
PP_3825: PP_3825 - conserved protein of unknown function, at 4,352,343 to 4,352,645
_3825
PP_5633: PP_5633 - conserved protein of unknown function, at 4,352,653 to 4,352,823
_5633
PP_3827: PP_3827 - 2-nitropropane dioxygenase, at 4,352,875 to 4,353,960
_3827
Position (kb) 4351
4352
4353 Strain fitness (log2 ratio) -1
0
1
2 at 4350.853 kb on + strand, within PP_3822 at 4350.854 kb on - strand, within PP_3822 at 4350.854 kb on - strand, within PP_3822 at 4350.950 kb on - strand, within PP_3822 at 4351.250 kb on + strand, within PP_3823 at 4351.250 kb on + strand, within PP_3823 at 4351.250 kb on + strand, within PP_3823 at 4351.356 kb on - strand, within PP_3823 at 4351.439 kb on + strand, within PP_3823 at 4351.439 kb on + strand, within PP_3823 at 4351.440 kb on - strand, within PP_3823 at 4351.440 kb on - strand, within PP_3823 at 4351.440 kb on - strand, within PP_3823 at 4351.444 kb on - strand, within PP_3823 at 4351.547 kb on + strand, within PP_3823 at 4351.547 kb on + strand, within PP_3823 at 4351.887 kb on - strand, within PP_3824 at 4352.055 kb on + strand, within PP_3824 at 4352.055 kb on + strand, within PP_3824 at 4352.056 kb on - strand, within PP_3824 at 4352.286 kb on + strand at 4352.287 kb on - strand at 4352.287 kb on - strand at 4352.385 kb on - strand, within PP_3825 at 4352.385 kb on - strand, within PP_3825 at 4352.385 kb on - strand, within PP_3825 at 4352.471 kb on + strand, within PP_3825 at 4352.471 kb on + strand, within PP_3825 at 4352.472 kb on - strand, within PP_3825 at 4352.472 kb on - strand, within PP_3825 at 4352.476 kb on - strand, within PP_3825 at 4352.476 kb on - strand, within PP_3825 at 4352.643 kb on + strand at 4352.643 kb on + strand at 4352.643 kb on + strand at 4352.644 kb on - strand at 4352.644 kb on - strand at 4352.644 kb on - strand at 4352.671 kb on + strand, within PP_5633 at 4352.672 kb on - strand, within PP_5633 at 4352.672 kb on - strand, within PP_5633 at 4352.672 kb on - strand, within PP_5633 at 4352.672 kb on - strand, within PP_5633 at 4352.683 kb on + strand, within PP_5633 at 4352.684 kb on - strand, within PP_5633 at 4352.821 kb on + strand at 4352.898 kb on + strand at 4353.167 kb on - strand, within PP_3827 at 4353.167 kb on - strand, within PP_3827 at 4353.169 kb on + strand, within PP_3827 at 4353.169 kb on + strand, within PP_3827 at 4353.169 kb on + strand, within PP_3827 at 4353.169 kb on + strand, within PP_3827 at 4353.170 kb on - strand, within PP_3827 at 4353.170 kb on - strand, within PP_3827
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 4,350,853 + PP_3822 0.73 +1.1 4,350,854 - PP_3822 0.73 +0.6 4,350,854 - PP_3822 0.73 -0.2 4,350,950 - PP_3822 0.84 -0.5 4,351,250 + PP_3823 0.24 -0.0 4,351,250 + PP_3823 0.24 +1.9 4,351,250 + PP_3823 0.24 +0.7 4,351,356 - PP_3823 0.40 -0.3 4,351,439 + PP_3823 0.52 +1.7 4,351,439 + PP_3823 0.52 +0.2 4,351,440 - PP_3823 0.53 +1.1 4,351,440 - PP_3823 0.53 -1.4 4,351,440 - PP_3823 0.53 +0.5 4,351,444 - PP_3823 0.53 -0.8 4,351,547 + PP_3823 0.69 -0.5 4,351,547 + PP_3823 0.69 +0.1 4,351,887 - PP_3824 0.17 +1.3 4,352,055 + PP_3824 0.61 +1.6 4,352,055 + PP_3824 0.61 +1.9 4,352,056 - PP_3824 0.61 -0.3 4,352,286 + -0.5 4,352,287 - -0.1 4,352,287 - +0.5 4,352,385 - PP_3825 0.14 -0.3 4,352,385 - PP_3825 0.14 -0.1 4,352,385 - PP_3825 0.14 +1.6 4,352,471 + PP_3825 0.42 -0.6 4,352,471 + PP_3825 0.42 +0.7 4,352,472 - PP_3825 0.43 +1.4 4,352,472 - PP_3825 0.43 -0.0 4,352,476 - PP_3825 0.44 +0.6 4,352,476 - PP_3825 0.44 -0.0 4,352,643 + -0.1 4,352,643 + +2.0 4,352,643 + -0.6 4,352,644 - +0.2 4,352,644 - -1.1 4,352,644 - +0.7 4,352,671 + PP_5633 0.11 -0.4 4,352,672 - PP_5633 0.11 -1.6 4,352,672 - PP_5633 0.11 +0.3 4,352,672 - PP_5633 0.11 +0.1 4,352,672 - PP_5633 0.11 +1.2 4,352,683 + PP_5633 0.18 -0.1 4,352,684 - PP_5633 0.18 -0.0 4,352,821 + -0.6 4,352,898 + +1.0 4,353,167 - PP_3827 0.27 -0.1 4,353,167 - PP_3827 0.27 -0.3 4,353,169 + PP_3827 0.27 -0.2 4,353,169 + PP_3827 0.27 -0.8 4,353,169 + PP_3827 0.27 -0.6 4,353,169 + PP_3827 0.27 +0.4 4,353,170 - PP_3827 0.27 +1.4 4,353,170 - PP_3827 0.27 +0.3
Or see this region's nucleotide sequence