Strain Fitness in Pseudomonas putida KT2440 around PP_3800

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3797 and PP_3798 overlap by 4 nucleotidesPP_3798 and PP_3799 overlap by 4 nucleotidesPP_3799 and PP_3800 overlap by 4 nucleotidesPP_3800 and PP_3801 are separated by 16 nucleotidesPP_3801 and PP_3802 overlap by 4 nucleotides PP_3797: PP_3797 - conserved membrane protein of unknown function, at 4,327,033 to 4,328,226 _3797 PP_3798: PP_3798 - conserved protein of unknown function, at 4,328,223 to 4,328,756 _3798 PP_3799: PP_3799 - conserved exported protein of unknown function, at 4,328,753 to 4,329,073 _3799 PP_3800: PP_3800 - conserved protein of unknown function, at 4,329,070 to 4,329,639 _3800 PP_3801: PP_3801 - putative Cation ABC transporter, periplasmic cation-binding protein, at 4,329,656 to 4,330,558 _3801 PP_3802: PP_3802 - putative Cation ABC transporter, ATP-binding protein, at 4,330,555 to 4,331,301 _3802 Position (kb) 4329 4330Strain fitness (log2 ratio) -3 -2 -1 0 1at 4328.328 kb on + strand, within PP_3798at 4328.328 kb on + strand, within PP_3798at 4328.328 kb on + strand, within PP_3798at 4328.329 kb on - strand, within PP_3798at 4328.406 kb on + strand, within PP_3798at 4328.406 kb on + strand, within PP_3798at 4328.467 kb on - strand, within PP_3798at 4328.679 kb on + strand, within PP_3798at 4328.680 kb on - strand, within PP_3798at 4328.680 kb on - strand, within PP_3798at 4328.766 kb on + strandat 4328.766 kb on + strandat 4328.766 kb on + strandat 4328.793 kb on + strand, within PP_3799at 4328.793 kb on + strand, within PP_3799at 4329.005 kb on + strand, within PP_3799at 4329.005 kb on + strand, within PP_3799at 4329.005 kb on + strand, within PP_3799at 4329.006 kb on - strand, within PP_3799at 4329.006 kb on - strand, within PP_3799at 4329.006 kb on - strand, within PP_3799at 4329.050 kb on + strandat 4329.051 kb on - strandat 4329.121 kb on + strandat 4329.121 kb on + strandat 4329.121 kb on + strandat 4329.121 kb on + strandat 4329.153 kb on - strand, within PP_3800at 4329.153 kb on - strand, within PP_3800at 4329.153 kb on - strand, within PP_3800at 4329.262 kb on + strand, within PP_3800at 4329.263 kb on - strand, within PP_3800at 4329.263 kb on - strand, within PP_3800at 4329.263 kb on - strand, within PP_3800at 4329.300 kb on - strand, within PP_3800at 4329.332 kb on + strand, within PP_3800at 4329.333 kb on - strand, within PP_3800at 4329.604 kb on + strandat 4329.719 kb on - strandat 4329.758 kb on + strand, within PP_3801at 4329.759 kb on - strand, within PP_3801at 4329.759 kb on - strand, within PP_3801at 4329.761 kb on + strand, within PP_3801at 4329.762 kb on - strand, within PP_3801at 4329.762 kb on - strand, within PP_3801at 4329.762 kb on - strand, within PP_3801at 4329.767 kb on + strand, within PP_3801at 4329.767 kb on + strand, within PP_3801at 4329.768 kb on - strand, within PP_3801at 4329.768 kb on - strand, within PP_3801at 4329.768 kb on - strand, within PP_3801at 4329.778 kb on + strand, within PP_3801at 4329.778 kb on + strand, within PP_3801at 4329.779 kb on - strand, within PP_3801at 4329.779 kb on - strand, within PP_3801at 4329.840 kb on - strand, within PP_3801at 4330.133 kb on + strand, within PP_3801at 4330.133 kb on + strand, within PP_3801at 4330.251 kb on - strand, within PP_3801at 4330.256 kb on + strand, within PP_3801at 4330.256 kb on + strand, within PP_3801at 4330.257 kb on - strand, within PP_3801at 4330.409 kb on + strand, within PP_3801at 4330.410 kb on - strand, within PP_3801at 4330.462 kb on + strand, within PP_3801at 4330.462 kb on + strand, within PP_3801at 4330.462 kb on + strand, within PP_3801at 4330.463 kb on - strand, within PP_3801at 4330.463 kb on - strand, within PP_3801at 4330.463 kb on - strand, within PP_3801at 4330.478 kb on + strandat 4330.479 kb on - strandat 4330.493 kb on + strandat 4330.493 kb on + strandat 4330.493 kb on + strandat 4330.494 kb on - strandat 4330.494 kb on - strandat 4330.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
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4,328,328 + PP_3798 0.20 +0.3
4,328,328 + PP_3798 0.20 -0.3
4,328,328 + PP_3798 0.20 -0.7
4,328,329 - PP_3798 0.20 +0.8
4,328,406 + PP_3798 0.34 +1.1
4,328,406 + PP_3798 0.34 -0.4
4,328,467 - PP_3798 0.46 -1.1
4,328,679 + PP_3798 0.85 +0.6
4,328,680 - PP_3798 0.86 -0.4
4,328,680 - PP_3798 0.86 -2.0
4,328,766 + -1.0
4,328,766 + -0.5
4,328,766 + -1.0
4,328,793 + PP_3799 0.12 -1.0
4,328,793 + PP_3799 0.12 -1.1
4,329,005 + PP_3799 0.79 -0.6
4,329,005 + PP_3799 0.79 +0.4
4,329,005 + PP_3799 0.79 -2.8
4,329,006 - PP_3799 0.79 -0.9
4,329,006 - PP_3799 0.79 -0.6
4,329,006 - PP_3799 0.79 +0.6
4,329,050 + +0.3
4,329,051 - -1.1
4,329,121 + +0.3
4,329,121 + +0.9
4,329,121 + +0.7
4,329,121 + -1.6
4,329,153 - PP_3800 0.15 +0.2
4,329,153 - PP_3800 0.15 +0.9
4,329,153 - PP_3800 0.15 +1.4
4,329,262 + PP_3800 0.34 -2.1
4,329,263 - PP_3800 0.34 -0.8
4,329,263 - PP_3800 0.34 +0.4
4,329,263 - PP_3800 0.34 +0.1
4,329,300 - PP_3800 0.40 +0.7
4,329,332 + PP_3800 0.46 +1.2
4,329,333 - PP_3800 0.46 -0.1
4,329,604 + +0.2
4,329,719 - +0.9
4,329,758 + PP_3801 0.11 +0.3
4,329,759 - PP_3801 0.11 -0.2
4,329,759 - PP_3801 0.11 +0.0
4,329,761 + PP_3801 0.12 -0.9
4,329,762 - PP_3801 0.12 -1.0
4,329,762 - PP_3801 0.12 +0.4
4,329,762 - PP_3801 0.12 -0.4
4,329,767 + PP_3801 0.12 +0.7
4,329,767 + PP_3801 0.12 +0.8
4,329,768 - PP_3801 0.12 -1.0
4,329,768 - PP_3801 0.12 +0.3
4,329,768 - PP_3801 0.12 -1.1
4,329,778 + PP_3801 0.14 +0.1
4,329,778 + PP_3801 0.14 -0.2
4,329,779 - PP_3801 0.14 -0.5
4,329,779 - PP_3801 0.14 +0.4
4,329,840 - PP_3801 0.20 +0.2
4,330,133 + PP_3801 0.53 +0.5
4,330,133 + PP_3801 0.53 -0.3
4,330,251 - PP_3801 0.66 +0.2
4,330,256 + PP_3801 0.66 -1.0
4,330,256 + PP_3801 0.66 -0.4
4,330,257 - PP_3801 0.67 -0.4
4,330,409 + PP_3801 0.83 +0.5
4,330,410 - PP_3801 0.83 -0.2
4,330,462 + PP_3801 0.89 +0.1
4,330,462 + PP_3801 0.89 +0.6
4,330,462 + PP_3801 0.89 +0.4
4,330,463 - PP_3801 0.89 +0.9
4,330,463 - PP_3801 0.89 +0.4
4,330,463 - PP_3801 0.89 -1.2
4,330,478 + -1.1
4,330,479 - +1.4
4,330,493 + +0.0
4,330,493 + -2.1
4,330,493 + +0.8
4,330,494 - +0.4
4,330,494 - -0.5
4,330,494 - -0.0

Or see this region's nucleotide sequence